PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g008540.1
Common NameMTR_5g008540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 98aa    MW: 11173.8 Da    PI: 9.1835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g008540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-132472355
              AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       GVr +k +g++++ Ird      ++ r++lg++  +++Aa a++ a+  l+g
  Medtr5g008540.1 24 NMGVRKRK-WGKFASKIRDqG----RNIRIWLGTYEEPQMAATACDIAAFHLKG 72
                     67***999.**********33....56**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.8592380IPR001471AP2/ERF domain
PRINTSPR003678.4E-62435IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-172481IPR016177DNA-binding domain
PfamPF008472.2E-72572IPR001471AP2/ERF domain
SMARTSM003802.5E-212686IPR001471AP2/ERF domain
CDDcd000181.93E-222681No hitNo description
Gene3DG3DSA:3.30.730.106.9E-242681IPR001471AP2/ERF domain
PRINTSPR003678.4E-64662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MEESNIMQEH EHVNVPPPTP ASSNMGVRKR KWGKFASKIR DQGRNIRIWL GTYEEPQMAA  60
TACDIAAFHL KGRDARLNFP DMIEKLQMSI QEYKIST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-152680560ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g008540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263941e-163CU326394.2 Medicago truncatula chromosome 5 clone mth2-12h14, COMPLETE SEQUENCE.
GenBankCU4695531e-163CU469553.2 Medicago truncatula chromosome 5 clone mth2-57m18, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610922.25e-63ethylene-responsive transcription factor ERF021
SwissprotQ9C9I23e-24ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLG7K7X59e-68G7K7X5_MEDTR; AP2 domain class transcription factor
STRINGAES938802e-68(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-26ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]