PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g008540.1 | ||||||||
Common Name | MTR_5g008540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 98aa MW: 11173.8 Da PI: 9.1835 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.4 | 3.5e-13 | 24 | 72 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr +k +g++++ Ird ++ r++lg++ +++Aa a++ a+ l+g Medtr5g008540.1 24 NMGVRKRK-WGKFASKIRDqG----RNIRIWLGTYEEPQMAATACDIAAFHLKG 72 67***999.**********33....56**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.859 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-6 | 24 | 35 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-17 | 24 | 81 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-7 | 25 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-21 | 26 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-22 | 26 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-24 | 26 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.4E-6 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MEESNIMQEH EHVNVPPPTP ASSNMGVRKR KWGKFASKIR DQGRNIRIWL GTYEEPQMAA 60 TACDIAAFHL KGRDARLNFP DMIEKLQMSI QEYKIST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-15 | 26 | 80 | 5 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g008540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU326394 | 1e-163 | CU326394.2 Medicago truncatula chromosome 5 clone mth2-12h14, COMPLETE SEQUENCE. | |||
GenBank | CU469553 | 1e-163 | CU469553.2 Medicago truncatula chromosome 5 clone mth2-57m18, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610922.2 | 5e-63 | ethylene-responsive transcription factor ERF021 | ||||
Swissprot | Q9C9I2 | 3e-24 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | G7K7X5 | 9e-68 | G7K7X5_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES93880 | 2e-68 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g008540.1 |
Entrez Gene | 11442565 |
Publications ? help Back to Top | |||
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