PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g008470.1
Common NameMTR_5g008470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 183aa    MW: 21053.1 Da    PI: 10.008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g008470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.4e-1475123355
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + GVr +k +g++++eIr+      k+ r++lg++  +++Aa a++ a+ +l+g
  Medtr5g008470.1  75 VVGVRKRK-WGKFASEIRVqE----KKSRIWLGNYEEPQMAAIAYDIAAFYLKG 123
                      78***999.**********44....57************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.29E-2469132No hitNo description
PROSITE profilePS5103219.62569131IPR001471AP2/ERF domain
SMARTSM003806.0E-2669137IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-1775132IPR016177DNA-binding domain
PRINTSPR003674.8E-97586IPR001471AP2/ERF domain
PfamPF008471.1E-775123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2477132IPR001471AP2/ERF domain
PRINTSPR003674.8E-9113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MHFSQESNIM QEQEHVNVPP PTPGEARIQD TIRIRYCTDT PIRENFKNQD TIWYRCRIRR  60
GYDTSTILKY RGTEVVGVRK RKWGKFASEI RVQEKKSRIW LGNYEEPQMA AIAYDIAAFY  120
LKGRDARLNF PDMIEKLPMP VSFKVKDMCV AAQQVVLEFK SRSSSSEGSV NSSIGSVVSK  180
KH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1471131263ATERF1
3gcc_A3e-1471131263ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g008470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263940.0CU326394.2 Medicago truncatula chromosome 5 clone mth2-12h14, COMPLETE SEQUENCE.
GenBankCU4695530.0CU469553.2 Medicago truncatula chromosome 5 clone mth2-57m18, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610922.25e-42ethylene-responsive transcription factor ERF021
TrEMBLG7K7X01e-134G7K7X0_MEDTR; AP2 domain class transcription factor
STRINGAES938751e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-28ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]