PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g007370.1
Common NameMTR_5g007370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 300aa    MW: 33780 Da    PI: 6.7112
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g007370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++lvd ++++G g+W++ ++  g++R++k+c++rw++yl
  Medtr5g007370.1 14 KGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYL 61
                     79*********************************************7 PP
2Myb_DNA-binding54.42.9e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+ l+++++  lG++ W++Ia +++ gRt++++k++w+++l
  Medtr5g007370.1  67 RGKFSDEEENLIINLHSVLGNK-WAAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-24864IPR009057Homeodomain-like
PROSITE profilePS5129417.583961IPR017930Myb domain
SuperFamilySSF466892.96E-3111108IPR009057Homeodomain-like
SMARTSM007171.2E-151363IPR001005SANT/Myb domain
PfamPF002497.6E-181461IPR001005SANT/Myb domain
CDDcd001672.27E-121661No hitNo description
PROSITE profilePS5129427.19462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2665117IPR009057Homeodomain-like
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1667112IPR001005SANT/Myb domain
CDDcd001672.18E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMRTPSNDES GLKKGPWSPE EDKILVDHIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWNNY  60
LRPDIRRGKF SDEEENLIIN LHSVLGNKWA AIATHLPGRT DNEIKNFWNT HLKKKLMQMG  120
LDPVTHRPRT DHLDLLSNLQ QIILNAANIV TSCDINNNAL RLQYSLLPQS LVNDVLGFNN  180
NIQSFYDGSN IGISSQTIQP NLQNFEAPLQ QLLPQEFECS QKFGEQIGNT NFASTVLSNS  240
LPKLVSVSPQ RSGTVKVGEE NMMINAKECC NTSSSNSFET WGDFINDDAN DAYWKDFIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g007370.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267920.0AC126792.15 Medicago truncatula clone mth2-8o8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610818.30.0transcription factor MYB92
RefseqXP_024639628.10.0transcription factor MYB92
SwissprotQ9SBF39e-81MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A396HJ860.0A0A396HJ86_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES937760.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-94myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]