PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g134870.1
Common NameMTR_4g134870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 426aa    MW: 46441.5 Da    PI: 8.3611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g134870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.3e-103293642355
              AP2  23 se.ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ n  ++ ++++lg+f++ae+Aa a+++a+ +l+g
  Medtr4g134870.1 329 KKkNTtRKgRSVWLGTFDSAEDAALAYDQAAFSLRG 364
                      332557445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF519051.55E-729102IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.602.2E-730208IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF502492.23E-7151262IPR012340Nucleic acid-binding, OB-fold
PROSITE profilePS5103212.023307373IPR001471AP2/ERF domain
PfamPF008471.0E-6329364IPR001471AP2/ERF domain
SMARTSM003801.8E-4329379IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-8333366IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-11334366IPR001471AP2/ERF domain
CDDcd000184.04E-11336366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MWGEGFKSND NLSASILLIH EADLKFGSSQ VKVFVAGGGI AGLVFALAAK RKEFEVVVFE  60
KDLIAIRGEG QYRGPIQIQI NALAALEAID MDVAEEVIGV GCITGDRIKG LVDGVSGLAV  120
QGIDAFGEVH AMGLRVSPCL EDEFIRTHPK KTIDELVCLD EEGVFVVGGK VEGLVEGAEW  180
WYSAYRCNRS VLAASGSYYC NGCVRHCKVK VKVSDGECKV ILVLFDNDVS FIVKKSCAKL  240
VADVKGENAD FYPSELKNLI GWTVNKDDNV VAGAQSGEML SRVTADPHDF VKGSVLLPKM  300
VPADLLGKRK LTKKKSLGKI CSRDQRHNKK KNTTRKGRSV WLGTFDSAED AALAYDQAAF  360
SLRGSKDICK RFNMIAEKSF HKERHCEQRK MLSKGVNSKA GKQLLIISDN QSTCSNSFSE  420
ITFNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g134870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541931e-113CR954193.3 Medicago truncatula chromosome 5 clone mth2-27a1, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072UTU80.0A0A072UTU8_MEDTR; AP2 domain class transcription factor
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]