PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g134580.1 | ||||||||
Common Name | MTR_4g134580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ZF-HD | ||||||||
Protein Properties | Length: 366aa MW: 41168.5 Da PI: 7.7888 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.9 | 1.8e-31 | 110 | 166 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 vrY+eClkNhAa++Gg+a+DGCgEfmps ge+gt++al+C+AC CHRnFHR+ev+ e Medtr4g134580.1 110 VVRYRECLKNHAAAMGGNATDGCGEFMPS-GEQGTIEALNCSACHCHRNFHRKEVQGE 166 689*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.3E-28 | 111 | 163 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.1E-30 | 112 | 163 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.155 | 113 | 162 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 115 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-28 | 272 | 346 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.65E-18 | 274 | 345 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 284 | 340 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MELSSSQDGE IPINHNNNNN NNNNNYGTNG HGHHMIHHHH VHEHPPHPLP LHHNHSNIII 60 SSSSSAAVVA VVPQNPSVNG TTTPMQAAAV STGVELDHDH SSYKKSSSVV VRYRECLKNH 120 AAAMGGNATD GCGEFMPSGE QGTIEALNCS ACHCHRNFHR KEVQGETEDQ ENYHHHSAFN 180 FNFNRQQHHH SMRKFMLPLP DQALGLGYHH HHSTPNTASA AATGNNNNIL PSRAVAPPHG 240 HGHIIMPFNY NIPSESDEQE EAAGRLHMHH HHHQQQQQQE VVMKKRFRTK FTQEQKEKML 300 NFAEKVGWKF QKQEESVVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKQLQH EHTTASANAN 360 HLPTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 285 | 342 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g134580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458710.1 | 0.0 | zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A072USW0 | 0.0 | A0A072USW0_MEDTR; Homeobox domain, ZF-HD class protein | ||||
STRING | XP_004499360.1 | 1e-104 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-62 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g134580.1 |
Entrez Gene | 25494366 |
Publications ? help Back to Top | |||
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