PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g134580.1
Common NameMTR_4g134580
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 366aa    MW: 41168.5 Da    PI: 7.7888
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g134580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.91.8e-31110166360
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                       vrY+eClkNhAa++Gg+a+DGCgEfmps ge+gt++al+C+AC CHRnFHR+ev+ e
  Medtr4g134580.1 110 VVRYRECLKNHAAAMGGNATDGCGEFMPS-GEQGTIEALNCSACHCHRNFHRKEVQGE 166
                      689*************************9.999*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.3E-28111163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-30112163IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.155113162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-22115166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-28272346IPR009057Homeodomain-like
SuperFamilySSF466896.65E-18274345IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26284340IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MELSSSQDGE IPINHNNNNN NNNNNYGTNG HGHHMIHHHH VHEHPPHPLP LHHNHSNIII  60
SSSSSAAVVA VVPQNPSVNG TTTPMQAAAV STGVELDHDH SSYKKSSSVV VRYRECLKNH  120
AAAMGGNATD GCGEFMPSGE QGTIEALNCS ACHCHRNFHR KEVQGETEDQ ENYHHHSAFN  180
FNFNRQQHHH SMRKFMLPLP DQALGLGYHH HHSTPNTASA AATGNNNNIL PSRAVAPPHG  240
HGHIIMPFNY NIPSESDEQE EAAGRLHMHH HHHQQQQQQE VVMKKRFRTK FTQEQKEKML  300
NFAEKVGWKF QKQEESVVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKQLQH EHTTASANAN  360
HLPTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212853421875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g134580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458710.10.0zinc-finger homeodomain protein 3
TrEMBLA0A072USW00.0A0A072USW0_MEDTR; Homeobox domain, ZF-HD class protein
STRINGXP_004499360.11e-104(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-62homeobox protein 21
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]