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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Medtr4g133660.1 |
| Common Name | MTR_4g133660 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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| Family |
GRAS |
| Protein Properties |
Length: 545aa MW: 61196.1 Da PI: 5.8252 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Medtr4g133660.1 | genome | Mt | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 412.5 | 3.8e-126 | 173 | 542 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
+e+Ll cA+avs+gd a+ + + l +++s +gdp+qRl ay++e+L+arl s+s +yk+l++++ + s+e +++++++++++P++kf+
Medtr4g133660.1 173 KEVLLLCAQAVSDGDIPTARGWMDNvLVKMVSVAGDPIQRLSAYLLEGLRARLELSGSLIYKSLKCEQPT---SKELMTYMHMLYQICPYFKFA 263
689******************998625677***************************************9...9999999************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
++ aN I ea+++e+r+HiiDf+i qG+QW L++aLa Rp+gpp +RiTgv++++s+ + l+ +ge+L++fA++ gv fef+ +a +
Medtr4g133660.1 264 YISANAVISEAMANESRIHIIDFQIAQGTQWQMLIEALARRPGGPPFIRITGVDDSQSFhaRGGGLQIVGEQLSNFARSRGVLFEFHS-AAMSG 356
*******************************************************9999889999***********************.89999 PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
+++ e+Lrv+pgEalaVn+ ++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e++++y+a+f+s+++ ++++
Medtr4g133660.1 357 CEVQRENLRVSPGEALAVNFPFSLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETMDFYTAMFESIDVACTKDDK 450
********************************************************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+ri+vE+ +++r+ivn++aceg er+erhe ++kWr+r+++aGF++ +ls++++ +++ +l+ ++++ y +e+++g+l+lgW++r++ + SaW
Medtr4g133660.1 451 KRISVEQNCVARDIVNMIACEGIERVERHEVFGKWRSRFSMAGFRQCQLSSSVMHSVQNMLKDFHQN-YWLEHRDGALYLGWMKRAMATSSAW 542
*****************************************************************66.************************* PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 545 aa
Download sequence Send
to blast |
MQMSQQRPNS SGLGFYHQPA QGIYLQTNLC GDRDGSSSQG TDLSFETYKP QRFTLESYPE 60
ITGFIDCDSP SYASVSSNRT PFSPQESQSC HSDHHQSPDN TYGSPISGMS SVDDGNDLKH 120
KLREIENSLL GPEDFDIVDS YGSCMETNLH GASPSAKYNW DLIAENIPKL DMKEVLLLCA 180
QAVSDGDIPT ARGWMDNVLV KMVSVAGDPI QRLSAYLLEG LRARLELSGS LIYKSLKCEQ 240
PTSKELMTYM HMLYQICPYF KFAYISANAV ISEAMANESR IHIIDFQIAQ GTQWQMLIEA 300
LARRPGGPPF IRITGVDDSQ SFHARGGGLQ IVGEQLSNFA RSRGVLFEFH SAAMSGCEVQ 360
RENLRVSPGE ALAVNFPFSL HHMPDESVSI ENHRDRLLRL VKSLSPKVVT LVEQESNTNT 420
SPFFQRFVET MDFYTAMFES IDVACTKDDK KRISVEQNCV ARDIVNMIAC EGIERVERHE 480
VFGKWRSRFS MAGFRQCQLS SSVMHSVQNM LKDFHQNYWL EHRDGALYLG WMKRAMATSS 540
AWMC*
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Mtr.4658 | 0.0 | flower| glandular trichome| leaf| pod| root| seed| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CU570868 | 0.0 | CU570868.2 M.truncatula DNA sequence from clone MTH2-162A5 on chromosome 3, complete sequence. |
