PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g132670.1
Common NameMTR_4g132670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 399aa    MW: 44360.1 Da    PI: 7.9845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g132670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013324347123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C  C +sF++  +L +H ++ H
  Medtr4g132670.1 324 YACALCFESFTNMKLLGSHVQKeH 347
                      89*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003553.3324347IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280326347IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369358386IPR007087Zinc finger, C2H2
SMARTSM003552.2358381IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280360381IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDVIPCQLIS PVSETIVRSV DSEILFSQGT ISTPLDEMVV QISGENDTEN GIVDRQCQVY  60
VKSKGRQCLR MAMRNDIYFY AHCSIKKEKC VKVITPICGG TAIGGSRCKN HSGSDGSNQV  120
SLPVGSKRPK LKVHCAYTHS RQEGTVEVPM VTEFPSQLIS PVSETVVQSV DSEILFNKGT  180
ISRPLDETVV QVSVEQDAKD GIVEQWRFRN NIYCCAHFSI KKEKCVKVLT PICGGTTIAG  240
SRCKNHSLPN LSFCKKHLPN AHINKSSNSN CSTLKRKFEE ICIGFSKIRI CNDSVLAHSR  300
IPLEIDTKSV IEDEDESFCL FRSYACALCF ESFTNMKLLG SHVQKEHPVN YGEHLFLLKC  360
IPCGDQFGTM EKLWLHVKSV HPAELKLSKY SLSKESNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g132670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1624400.0AC162440.26 Medicago truncatula chromosome 8 clone mth2-177g2, complete sequence.
GenBankAC2255370.0AC225537.2 Medicago truncatula clone mth2-66l14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636622.12e-96histone-lysine N-methyltransferase SUVR5
TrEMBLG7JKE90.0G7JKE9_MEDTR; Uncharacterized protein
STRINGAES926760.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]