PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g131600.1 | ||||||||
Common Name | MTR_4g131600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARR-B | ||||||||
Protein Properties | Length: 591aa MW: 65555.3 Da PI: 4.6536 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.4 | 5.1e-26 | 201 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+W +eLH++Fv+av++ G +kA Pk+il+lm+v+gLt+e+v SHLQ+YR+ Medtr4g131600.1 201 KPRLVWDHELHRKFVSAVNHV-GLDKASPKKILDLMNVEGLTRENVSSHLQRYRI 254 79*******************.********************************7 PP | |||||||
2 | Response_reg | 70.1 | 9.3e-24 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ +++l++ l +y +v++++++ ealell+ek+ +Dl++ D++mp+mdG++ll++ e +lp i+++ +++ e + + + Medtr4g131600.1 26 VLAVDDDPTYLKVLEKQLLTCNY-NVTTTTKPVEALELLREKKdmFDLVISDVSMPDMDGFKLLEQVGLEM-DLPFIMLSVNDDIEKVMKSVIH 117 799********************.***************999999**********************6644.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga +l+Kp+ +eel Medtr4g131600.1 118 GACNYLVKPIRMEELKS 134 **************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.0E-132 | 6 | 583 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-38 | 23 | 147 | No hit | No description |
SuperFamily | SSF52172 | 6.97E-33 | 23 | 147 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 2.9E-27 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.899 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.6E-21 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.71E-26 | 27 | 139 | No hit | No description |
SuperFamily | SSF46689 | 7.88E-17 | 198 | 257 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.261 | 198 | 257 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-27 | 199 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-22 | 201 | 254 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.8E-6 | 204 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MMVVVVEDSF GVVNVLGEGF PAGMRVLAVD DDPTYLKVLE KQLLTCNYNV TTTTKPVEAL 60 ELLREKKDMF DLVISDVSMP DMDGFKLLEQ VGLEMDLPFI MLSVNDDIEK VMKSVIHGAC 120 NYLVKPIRME ELKSIWQHVV RKKIESKDQN QGIISDGVYG QDTSSENIAN KNKMHGRKRK 180 EQTEEEEAEQ DNDEKCSTRK KPRLVWDHEL HRKFVSAVNH VGLDKASPKK ILDLMNVEGL 240 TRENVSSHLQ RYRIDIKWLS KQDRGDDALD PYQQKGSVGG YGDFCTLSGS TRVLSSILPA 300 YASNDMFCRL NAPSSLNLEG MSSSALVPPL QSHNIPNFET PMFSESESSS SVHGIQTSMD 360 INQFQQNIYL PDNINLSPID DSNAVTDSSS FQDIGATVNN ANVSLSCISS NHIQTHKSGA 420 FINHSHVEGA AVKTQSFNPV TSGSSNFASN SVPLSEDFNN DQMLHNNFKF ASPSSHFSST 480 DIVAVPLEET MQCQDGLLGN VINAPWYTQH QNASSSFNNT LDYLASSNGD TSSMVHGLAQ 540 TNSSLITQMP EVEKFYSDER TMESNGDCFY EQLLSLDGFI QNSCVPWMTQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-23 | 197 | 260 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g131600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC170084 | 0.0 | AC170084.14 Medicago truncatula clone mth2-156k10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636615.1 | 0.0 | two-component response regulator ORR24 | ||||
TrEMBL | G7JHZ3 | 0.0 | G7JHZ3_MEDTR; Two-component response regulator | ||||
STRING | AES92580 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 6e-87 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g131600.1 |
Entrez Gene | 11440093 |
Publications ? help Back to Top | |||
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