PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g128930.1
Common NameMTR_4g128930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CO-like
Protein Properties Length: 376aa    MW: 41119 Da    PI: 6.1684
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g128930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.47.1e-091960338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     ++ C+ ++  ++ lfC++++ +lC +C +++H+       H+
  Medtr4g128930.1 19 PKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSAnklssrHE 60
                     578*****************************6566666676 PP
2zf-B_box28.62.8e-0962107342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ +++  C+ +   lC +C + +H+       H++vp+
  Medtr4g128930.1  62 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 107
                      689*****************************66899999*99986 PP
3CCT70.44.4e-24298341144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Medtr4g128930.1 298 REARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 341
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.3E-131764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7081764IPR000315B-box-type zinc finger
PfamPF006433.0E-71961IPR000315B-box-type zinc finger
CDDcd000212.63E-82164No hitNo description
PROSITE profilePS5011911.00760107IPR000315B-box-type zinc finger
PfamPF006433.0E-762107IPR000315B-box-type zinc finger
CDDcd000211.54E-963107No hitNo description
SMARTSM003361.7E-1065107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.896298340IPR010402CCT domain
PfamPF062032.5E-18298340IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGIERGGLKS LRGGWSVPPK LCDSCKLTPA ALFCRSDSAF LCINCDSTIH SANKLSSRHE  60
RVWMCEVCEQ APASVTCKAD AAALCVTCDS DIHSANPLAR RHERVPVEPF FDSAESVVKS  120
SSAAAAAAAS FNFVVPTDDG YGQDDAEAAA WLIPNPNFGS KLNETQDIKT REMFFSDMDP  180
FLDFDYSNNF QNNNCSNAMN DSVVPVQTKP TPAPMMNHNS EGCFDIDFCR SKLSSFNYPS  240
HSISHSVSSS SLDVGVVPDG NTVSEISYNF GSESMVSGGV NSSNQGVQGA TQLCGMDREA  300
RVMRYREKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TEIDSDVDRL YNPADPLSVP  360
SSMLMDCPYG VVPTF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.120250.0glandular trichome| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g128930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1271690.0AC127169.13 Medicago truncatula chromosome 8 clone mth2-36n3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610187.10.0zinc finger protein CONSTANS-LIKE 5 isoform X2
SwissprotQ9FHH81e-121COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLG7JD460.0G7JD46_MEDTR; Putative transcription factor C2C2-CO-like family
STRINGAES923840.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-111CONSTANS-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]