PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g127140.1 | ||||||||
Common Name | MTR_4g127140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21924.1 Da PI: 7.1901 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 8.9e-22 | 19 | 67 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e +s++qvtfskRr+g++ KA+EL+vLCd+ +a+i+fs+ +kl+ + Medtr4g127140.1 19 KKVEKESQKQVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLFCF 67 578999***************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-31 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.539 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-26 | 11 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-22 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-19 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDMVNQRKKN MGRKKIEIKK VEKESQKQVT FSKRRQGLFR KASELCVLCD VHAAIIVFSP 60 GDKLFCFGQP DTYSVLNSYI KGTTEFEDSK VAENFLTYQD YNRQYVEAQK MLEMEKKKLE 120 DVQNLAKIFN KGGDWWNDSI DDMRWNDSID DMSSDQLEQF MISIYELRRK LVERADELVM 180 KQSAMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 11 | 79 | 1 | 69 | MEF2C |
5f28_B | 2e-15 | 11 | 79 | 1 | 69 | MEF2C |
5f28_C | 2e-15 | 11 | 79 | 1 | 69 | MEF2C |
5f28_D | 2e-15 | 11 | 79 | 1 | 69 | MEF2C |
6byy_A | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 11 | 79 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g127140.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174357 | 0.0 | AC174357.6 Medicago truncatula chromosome 8 clone mth2-26c10, complete sequence. | |||
GenBank | BT142542 | 0.0 | BT142542.1 Medicago truncatula clone JCVI-FLMt-2F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610029.2 | 1e-137 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | G7JTA2 | 1e-135 | G7JTA2_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES92226 | 1e-133 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-20 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g127140.1 |
Entrez Gene | 11424700 |
Publications ? help Back to Top | |||
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