PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g125490.1
Common NameMTR_4g125490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRF
Protein Properties Length: 431aa    MW: 49079.3 Da    PI: 8.5915
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g125490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.3e-2474117144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Medtr4g125490.1  74 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 117
                      79***************************************987 PP
2QLQ57.54.2e-20943236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Medtr4g125490.1  9 PFTPTQWQELEHQALIYKYMASGISIPPDLLLTIK 43
                     9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-14942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.368944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9874118IPR014977WRC domain
PfamPF088791.6E-2075117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MMNGRNRYPF TPTQWQELEH QALIYKYMAS GISIPPDLLL TIKRSYLDSS RLSPHQSQHF  60
GWNYLPMGLG RKIDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGKN RSRKPVEVLK  120
TTNTDAPAAT STILSITKNS SLDSDHNTAA LTSTTHDTNY HYPQHSSYAS SHLNHSFLYH  180
NPPSSRPNFS FQDNSAPLFL DSNGSSSHNN NNTDCRNRYV YGLKEEVDEH AFFTEPSGTI  240
RSLSASSMDD SWQLTPLTIS SSSSFKQRNC SGLSNDNEYS YLQLDNNSKQ PQQDQGCYIS  300
GSEETFMKHG KEEPQKIFHR FFDEWPPKSS RNSWLDLDDK SSTTQLSISI PTSSHDFTTF  360
SSTNQRGKWF LFTLLSLKHC YKHINIDNNL RKTLLSLELC STNISSTDNN FYLCQRGRVS  420
VAPGVRVNGS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g125490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098465e-67AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458421.20.0growth-regulating factor 1 isoform X1
TrEMBLA0A072US130.0A0A072US13_MEDTR; Growth-regulating factor-like protein
STRINGXP_007154592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-52growth-regulating factor 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]