PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g123740.1
Common NameMTR_4g123740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 271aa    MW: 29939 Da    PI: 5.7026
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g123740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-155.98.4e-1866358116
             CG-1  58 kkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116
                      ++kk gk + E h kLK g+v vl+c+Ya++e+n++f+rr+y +L+e++++ivlvhy e
  Medtr4g123740.1   6 RRKKVGK-IGEGHIKLKDGSVAVLHCFYARGEDNANFRRRVYRMLDEQFKDIVLVHYGE 63 
                      4555565.99***********************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143721.881170IPR005559CG-1 DNA-binding domain
SMARTSM010760.0051165IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-13661IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MATVGRRKKV GKIGEGHIKL KDGSVAVLHC FYARGEDNAN FRRRVYRMLD EQFKDIVLVH  60
YGEGRKSGIF SHLHVVPVTL GGSSSHSGSV PSSSKTSSPI SDVQVSLTSN ANEIDKHRAS  120
EYENVELQNP SQVYSHAQST NSSIHHCAPQ LAHEATGFSQ LMRNPIISSW RSDNYQNVNQ  180
EQATVVDCKK GIYNKDVIQH DPATTIGIGA VLDGFGQWMN KETDGDWDNS LMASNSGNNS  240
NTFDVDNLDM DYLEQLLGID DDFTLDWTFD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g123740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550574.18e-48calmodulin-binding transcription activator 2 isoform X1
RefseqXP_028211714.18e-48calmodulin-binding transcription activator 2-like isoform X1
TrEMBLG7JQ220.0G7JQ22_MEDTR; Calmodulin-binding transcription activator, putative
STRINGAES920511e-155(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142411819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-15Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]