PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g123040.1
Common NameMTR_4g123040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 316aa    MW: 35996.1 Da    PI: 7.4433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g123040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-162673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l ++++ +G g+W+t a+  g++Rt+k+c++r+++yl
  Medtr4g123040.1 26 RGPWTVDEDLTLMNYIATHGEGRWNTLANSAGLKRTGKSCRLRLLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding51.91.7e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  Medtr4g123040.1  79 RGNITLEEQLLILELHTRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4042173IPR017930Myb domain
SuperFamilySSF466891.35E-2823120IPR009057Homeodomain-like
SMARTSM007175.0E-112575IPR001005SANT/Myb domain
PfamPF002492.9E-142673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-192780IPR009057Homeodomain-like
CDDcd001673.62E-82873No hitNo description
PROSITE profilePS5129423.27574128IPR017930Myb domain
SMARTSM007179.1E-1478126IPR001005SANT/Myb domain
PfamPF002491.9E-1479122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2181126IPR009057Homeodomain-like
CDDcd001672.88E-799122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDVKGRGSNN KNNLMSSDED DMDLRRGPWT VDEDLTLMNY IATHGEGRWN TLANSAGLKR  60
TGKSCRLRLL NYLRPDVRRG NITLEEQLLI LELHTRWGNR WSKIAQYLPG RTDNEIKNYW  120
RTRVQKLAKQ LKCDVNSKQF KDTMRYLWMP RLVERIQAAA AATTTTTTTA TNTSYNNNGS  180
KMMGSTPTII NYEFMSSQPH MTQSYTLENS NTTASSDSFE NKVSTLSDLG DNNYYCTSVS  240
NKNNPNANSN YYQPSHQLSF SDCITSPSGL FSQGLMDFQS MEPNTTWMQS GDSSDIFWNA  300
ENMLFLQQQL MNDTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-232312024120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g123040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458334.10.0transcription factor MYB108
SwissprotQ10MB43e-88MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A072V2Q60.0A0A072V2Q6_MEDTR; Myb transcription factor
STRINGXP_004508108.11e-133(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.17e-83myb domain protein 108
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]