PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g121840.3
Common NameMTR_4g121840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 895aa    MW: 102091 Da    PI: 8.1619
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g121840.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1135.71.5e-423511835118
             CG-1  35 ksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                      +sg+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +np+f rrcywlL+++le+ivlvhy+e++
  Medtr4g121840.3  35 TSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPNFVRRCYWLLDKSLEHIVLVHYRETQ 118
                      69*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143758.9172123IPR005559CG-1 DNA-binding domain
SMARTSM010763.3E-4628118IPR005559CG-1 DNA-binding domain
PfamPF038597.8E-3635116IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.1E-4316430IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-16341428IPR014756Immunoglobulin E-set
PfamPF018333.5E-5342427IPR002909IPT domain
SuperFamilySSF484038.39E-18518639IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-16527639IPR020683Ankyrin repeat-containing domain
CDDcd002045.37E-14535636No hitNo description
PfamPF127965.2E-7535606IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.141544609IPR020683Ankyrin repeat-containing domain
SMARTSM002485.1E-6577606IPR002110Ankyrin repeat
PROSITE profilePS5008811.434577609IPR002110Ankyrin repeat
SMARTSM002482600616647IPR002110Ankyrin repeat
SuperFamilySSF525408.23E-7684791IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001541740762IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.108742770IPR000048IQ motif, EF-hand binding site
SMARTSM000150.17763785IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.474764788IPR000048IQ motif, EF-hand binding site
SMARTSM0001513843865IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041845873IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MDSTHCKTWM LRALRRKQEQ DGFVPMKFMP CFLITSGTIV LFDRKKLRNF RKDGHNWKKK  60
KDGKTVKEAH EHLKVGNEER IHVYYAHGLD NPNFVRRCYW LLDKSLEHIV LVHYRETQEF  120
QGSPITPVNS NSTTASDPSA PWLLSEEIDS GTKTAYAGEI NENITVKSHE LRLHELNTLE  180
WDDLVVANDL NTSVVPNGGK VPYFDQQNQI LLNDSFSNVV NNASAEIRTF NNLTQPIAVS  240
NSIPYNFSES VTLQTISNQG YQNEQRNHPV SSSGVDSLNT LVNDRLQSQD SFGMWVNQFM  300
SDSPCSVDDS ALGSSVSSVN EPYSSLVVDN QQLSLPEQVF NLTDVSPAWV SSTEKSKILV  360
TGLFHKDYLH LPKSNLICVC GDASVPAEIV QDGVYRCWVP PHSPGFVNLY LSFDGHNPIS  420
QVVTFEYRTP VLHDPVASME EKNNWDEFQL QMRLSYLLFA KQQSLDVISS KVSLSRLKEA  480
REFSLKTSFI SNTWQYLMKS TLDNKIPFSQ AKDALFGIAL KNRLKEWLSE KIVLGCKTTE  540
YDAQGQSVIH LCAILEYTWA ITLFSWSGLS LDFRDKFGWT ALHWAAYYGR EKMVATLLSA  600
GAKPNLVTDP THQNPGGCTA ADLAYTRGYH GLAAYLSEKS LVEQFNDMSL AGNISGSLET  660
STDDPVNSEN LTEEQLYVKD TLAAYRTAAD AAARIQEAYR QHSLKLQTEA VEFSSPEAEA  720
RKIVAAMKIQ HAFRNFETKK VMAAAARIQH RFRTWKIRRD FLNMRRQAIK IQAAFRCFQQ  780
RKQYCKIIWS VGVVEKAVLR WRLKRKGFRG LRLNTEEESG DQNQQSDAEE EFFRTGRKQA  840
EERVERSVIR VQAMFRSKKA QEDYRRMKLA LNQAKLEREY EKMLSNEVDM KMKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14360RKKLRNFRKDGHNWKKKK
24459KKLRNFRKDGHNWKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.109970.0flower| glandular trichome| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g121840.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267800.0AC126780.18 Medicago truncatula chromosome 8 clone mth2-10n4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609751.20.0calmodulin-binding transcription activator 5
RefseqXP_024637895.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A072UR960.0A0A072UR96_MEDTR; Calmodulin-binding transcription activator
STRINGAES919480.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]