PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g121840.1
Common NameMTR_4g121840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 925aa    MW: 105302 Da    PI: 7.838
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g121840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.42e-51321483118
             CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      +e ++rwl+++ei+a+L n++ +++  ++ + pksg+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +np+f 
  Medtr4g121840.1  32 EEaRTRWLRPNEIHAMLSNHKYFTINVKPMNLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPNFV 125
                      5669****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rrcywlL+++le+ivlvhy+e++
  Medtr4g121840.1 126 RRCYWLLDKSLEHIVLVHYRETQ 148
                      ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.01427153IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7330148IPR005559CG-1 DNA-binding domain
PfamPF038594.0E-4533146IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.4E-4346460IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.35E-16371458IPR014756Immunoglobulin E-set
PfamPF018333.7E-5372457IPR002909IPT domain
SuperFamilySSF484038.86E-18548669IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-16558669IPR020683Ankyrin repeat-containing domain
PfamPF127965.5E-7565636IPR020683Ankyrin repeat-containing domain
CDDcd002046.81E-14565666No hitNo description
PROSITE profilePS5029715.141574639IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.434607639IPR002110Ankyrin repeat
SMARTSM002485.1E-6607636IPR002110Ankyrin repeat
SMARTSM002482600646677IPR002110Ankyrin repeat
SuperFamilySSF525407.97E-7713821IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001541770792IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.108772800IPR000048IQ motif, EF-hand binding site
SMARTSM000150.17793815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.474794818IPR000048IQ motif, EF-hand binding site
SMARTSM0001513873895IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041875903IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MMMANNLPGQ LVGSEIHGFH TLQDLDVASI TEEARTRWLR PNEIHAMLSN HKYFTINVKP  60
MNLPKSGTIV LFDRKKLRNF RKDGHNWKKK KDGKTVKEAH EHLKVGNEER IHVYYAHGLD  120
NPNFVRRCYW LLDKSLEHIV LVHYRETQEF QGSPITPVNS NSTTASDPSA PWLLSEEIDS  180
GTKTAYAGEI NENITVKSHE LRLHELNTLE WDDLVVANDL NTSVVPNGGK VPYFDQQNQI  240
LLNDSFSNVV NNASAEIRTF NNLTQPIAVS NSIPYNFSES VTLQTISNQG YQNEQRNHPV  300
SSSGVDSLNT LVNDRLQSQD SFGMWVNQFM SDSPCSVDDS ALGSSVSSVN EPYSSLVVDN  360
QQLSLPEQVF NLTDVSPAWV SSTEKSKILV TGLFHKDYLH LPKSNLICVC GDASVPAEIV  420
QDGVYRCWVP PHSPGFVNLY LSFDGHNPIS QVVTFEYRTP VLHDPVASME EKNNWDEFQL  480
QMRLSYLLFA KQQSLDVISS KVSLSRLKEA REFSLKTSFI SNTWQYLMKS TLDNKIPFSQ  540
AKDALFGIAL KNRLKEWLSE KIVLGCKTTE YDAQGQSVIH LCAILEYTWA ITLFSWSGLS  600
LDFRDKFGWT ALHWAAYYGR EKMVATLLSA GAKPNLVTDP THQNPGGCTA ADLAYTRGYH  660
GLAAYLSEKS LVEQFNDMSL AGNISGSLET STDDPVNSEN LTEEQLYVKD TLAAYRTAAD  720
AAARIQEAYR QHSLKLQTEA VEFSSPEAEA RKIVAAMKIQ HAFRNFETKK VMAAAARIQH  780
RFRTWKIRRD FLNMRRQAIK IQAAFRCFQQ RKQYCKIIWS VGVVEKAVLR WRLKRKGFRG  840
LRLNTEEESG DQNQQSDAEE EFFRTGRKQA EERVERSVIR VQAMFRSKKA QEDYRRMKLA  900
LNQAKLEREY EKMLSNEVDM KMKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17390RKKLRNFRKDGHNWKKKK
27489KKLRNFRKDGHNWKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.109970.0flower| glandular trichome| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g121840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1267800.0AC126780.18 Medicago truncatula chromosome 8 clone mth2-10n4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609751.20.0calmodulin-binding transcription activator 5
RefseqXP_024637895.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLG7JMT30.0G7JMT3_MEDTR; Calmodulin-binding transcription activator
STRINGAES919480.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]