PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g119600.1
Common NameMTR_4g119600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 343aa    MW: 39063.8 Da    PI: 9.9935
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g119600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.44.5e-0886163790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A+++GF++++++s+         + ++vC ++g++   kkk   ++ ++ + ++gC  ++   ++k +++w ++ l+  HnH++ 
  Medtr4g119600.1  86 ANKAGFTIVTQRSSLI-----NPMFRLVCERSGSHIVPKKK--PKHANTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHPME 163
                      8999999999876665.....34889*********999988..8999999**********9766666***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-586163IPR004330FAR1 DNA binding domain
PfamPF105512.1E-11277324IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVKNAKDVPG ETKENFVENS GVVKPPNFEA KTNIDEASVH VEASKYVGGS GVLPLQPHEV  60
DTAKFFSDDV KSKNRDELLE WVRRQANKAG FTIVTQRSSL INPMFRLVCE RSGSHIVPKK  120
KPKHANTGSR KCGCLFMISG YQSKQTKEWG LNILNGVHNH PMEPALEGHI LADRLKEDDK  180
KIVRDLTKSK MLPRNILIHL KNQRPHCMTN VKQVYNERQQ IWKANRGDKK PLQFLISKLE  240
EHNYTYYSRT QLESNTIEDI FWAHPTSIKL FNNFPTVLVM DSTYKTNMYR MPMFEVVGVT  300
STDLTYSVGF GFMTHEKEET TKGVKQSGAY FVGHSRKTKA TI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248520.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g119600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743710.0AC174371.23 Medicago truncatula chromosome 8 clone mth2-50f21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024628739.12e-63protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7JKD10.0G7JKD1_MEDTR; FAR1 DNA-binding domain protein
STRINGAES918510.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-10FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]