PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g119280.1
Common NameMTR_4g119280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 512aa    MW: 53409.3 Da    PI: 8.2248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g119280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-124873227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG+C yG+rC+F+H++
  Medtr4g119280.1 48 DEADCIYYLRTGFCGYGSRCRFNHPR 73
                     6799********************96 PP
2zf-CCCH36.29.9e-1294118327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C+++artG Ck+G++Ck++H++
  Medtr4g119280.1  94 QPVCQYYARTGSCKFGASCKYHHPR 118
                      689********************96 PP
3zf-CCCH352.4e-11140164327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++ +tG+Ck+G++CkF+H++
  Medtr4g119280.1 140 EKECSYYVKTGQCKFGATCKFHHPQ 164
                      679********************97 PP
4zf-CCCH36.11.1e-11335360227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++ +C+++++tG Ck+G++C+++H+p
  Medtr4g119280.1 335 DQQECQHYMKTGDCKFGSTCRYHHPP 360
                      5679********************97 PP
5zf-CCCH28.72.2e-09381403426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +C ++ + G+Ck+G+ CkF H+
  Medtr4g119280.1 381 QPCTHYTQRGFCKFGSACKFDHP 403
                      69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2954674IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-64874IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-791118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.66691119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.12E-694119IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-994118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-596118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6138165IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5139164IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9140164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4143163IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713333361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6335361IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4339359IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5377404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14377405IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6380407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5381402IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7381403IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEPRYGRAND GSSQLHSDPS PEWTSVGADE GYGGLVGGGG ESYPQRPDEA DCIYYLRTGF  60
CGYGSRCRFN HPRDRGAVIG AARIAGEYPE RVGQPVCQYY ARTGSCKFGA SCKYHHPRQA  120
AGTTPPVSLN CYGYPLRVGE KECSYYVKTG QCKFGATCKF HHPQPAGGQM IAPSPVPQVS  180
PLPMPVPSPI YQTVQPPSGP SQQQYGVLVA RPPLLHGSFV QGPYGPMVMS PTMVPFSGWS  240
PYQAPAGSPV LPSSNPLSVG STQLYGITQL PSPTTAYTQL PSPTTAYTGP YQSSGPSAGP  300
YQSSGPSAGP YQSSGPSTGP SGSSQKEHSL PERPDQQECQ HYMKTGDCKF GSTCRYHHPP  360
DMGAPKVNLS PIGLPLRPGA QPCTHYTQRG FCKFGSACKF DHPTGSLSYS PSASSLSDMP  420
VAPYPVGSAI GTLAPSSSSS ELRPELASGS SKEPASSRMS SSMSTSTASA GLTLSTVVPV  480
SQSDAQPSSQ SSGSLATPSA TTSSTVSHTS S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.115740.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g119280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743270.0AC174327.15 Medicago truncatula chromosome 8 clone mth2-108e23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609623.20.0zinc finger CCCH domain-containing protein 34 isoform X2
SwissprotQ6NPN31e-142C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLG7JKA00.0G7JKA0_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type protein
STRINGAES918200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-116C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]