PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g118830.1 | ||||||||
Common Name | MTR_4g118830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 20409.7 Da PI: 9.7648 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26 | 1.7e-08 | 29 | 72 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++++ f L + +P++ ++ + i+ ++++YIk+L+ Medtr4g118830.1 29 VERERRNKLKQMFTHLTTTVPTL----HPNATQEVIVNETIQYIKELE 72 7*********************9....7889999***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.315 | 21 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-4 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-10 | 28 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-10 | 28 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.93E-5 | 29 | 76 | No hit | No description |
Pfam | PF00010 | 4.7E-6 | 29 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEEYSNKSLS EMSNRKRATT IKTEEVLNVE RERRNKLKQM FTHLTTTVPT LHPNATQEVI 60 VNETIQYIKE LEEKKKILEE MKESKSKKHV ERGFNLLVPC RNRNPNCSVT VTGSSNVAFF 120 GIESVAKPGL ITVILKVFLK NEAEVLAANV SVNDGNLILA ITALVQNGAV IEKIKREIMS 180 L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g118830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147364 | 0.0 | AC147364.7 Medicago truncatula chromosome 8 clone mth2-68g24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609586.1 | 1e-127 | uncharacterized protein LOC11405343 | ||||
TrEMBL | G7JJ33 | 1e-126 | G7JJ33_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES91783 | 1e-127 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14330 | 13 | 14 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g118830.1 |
Entrez Gene | 11405343 |
Publications ? help Back to Top | |||
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