PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g117990.1
Common NameMTR_4g117990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 341aa    MW: 37889.8 Da    PI: 9.4371
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g117990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.89.3e-2143133186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                      +W+ +e+laLi+ +re++ +l+rg+lk+++W+ev++ +          ++p+qC++k+e+l+kry+ + +++++  +s+  s +++f+ ++
  Medtr4g117990.1  43 CWSPEETLALIDSYREKWYSLGRGNLKATHWQEVADSVsnrcPNVTPAKTPVQCRHKMEKLRKRYRTEIQRARSLpHSRFNSAWVHFKLMD 133
                      7*********************************9999665455566889************************98899999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-2042135No hitNo description
PROSITE profilePS500906.45844104IPR017877Myb-like domain
SMARTSM005958.1E-1051140IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSSPPSTTTP PPLSDPPTAV PLPLALPAPL PIPPSTRRLP PPCWSPEETL ALIDSYREKW  60
YSLGRGNLKA THWQEVADSV SNRCPNVTPA KTPVQCRHKM EKLRKRYRTE IQRARSLPHS  120
RFNSAWVHFK LMDSMEKGPS PVKSENNDSD SADDDEDEDH EQDLYLDIKN GHGSNTRSIN  180
KLYKNGFGGG IGGGFSGGGG GGVVGGGFRI RYPPAQPESK FSSDQKYNPN PNLNQNYHTP  240
PMATGTKGLG NKRERDPLTE VVSAIKLLGD GFVRMEQKKM EMAREIETMR MEMEMKRTEM  300
ILESQQRIVE AFAKAVSDDS NNNNNKMKPI NKRIPSPQQP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g117990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458224.20.0trihelix transcription factor ASIL1
TrEMBLA0A072V2C00.0A0A072V2C0_MEDTR; Transcription factor
STRINGXP_004508343.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-58Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]