PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g116545.1 | ||||||||
Common Name | MTR_4g116545 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TALE | ||||||||
Protein Properties | Length: 342aa MW: 39459 Da PI: 5.9497 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23 | 1.4e-07 | 281 | 313 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Medtr4g116545.1 281 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 313 59*****************************87 PP | |||||||
2 | ELK | 30.6 | 7.5e-11 | 234 | 255 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Medtr4g116545.1 234 ELKHELKQGYKEKIVDVREEIL 255 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.7E-18 | 68 | 112 | IPR005540 | KNOX1 |
Pfam | PF03790 | 5.4E-17 | 70 | 110 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.9E-25 | 119 | 175 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.5E-18 | 128 | 174 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.4E-7 | 234 | 255 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.83 | 234 | 254 | IPR005539 | ELK domain |
SMART | SM01188 | 8.9E-4 | 234 | 255 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.596 | 254 | 317 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 256 | 321 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-10 | 256 | 321 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.44E-10 | 257 | 316 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-25 | 261 | 317 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.8E-18 | 274 | 313 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MAFHEHLQQE IAFQRFTEEE DEERASWLNN NNNNARQQNF MQMEPERREK SMDRNHRNDN 60 NCETEELREY KAEILGHPLY DQLLSAHVSC LRIATPVDQL PRIDAQLQQA QRVLQKYSSV 120 GIGNMDPKEL DHFMTHYVLL LCAFKEQLQQ HVRVHAMEAV MACWDLEQSL QSLTGVSSGE 180 GTGATMSDDE DEQAESNARL YNEGSSLDGV DTLGFGPLVP TETERSLMER VRLELKHELK 240 QGYKEKIVDV REEILRKRRA GKLPGDTTSL LKAWWQSHSK WPYPTEEDKA RLVQETGLQL 300 KQINNWFINQ RKRNWHANSP SSSSSKTKRK SAGDSSNQSF M* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.13688 | 0.0 | flower| leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g116545.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138628 | 0.0 | BT138628.1 Medicago truncatula clone JCVI-FLMt-17B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458130.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X2 | ||||
Swissprot | P48000 | 1e-157 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
Swissprot | P48001 | 1e-157 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A072US32 | 0.0 | A0A072US32_MEDTR; Class II knotted-like homeobox protein | ||||
STRING | AES91722 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 1e-154 | KNOTTED1-like homeobox gene 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g116545.1 |
Entrez Gene | 25493970 |
Publications ? help Back to Top | |||
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