PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g114040.1
Common NameMTR_4g114040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 595aa    MW: 67416.6 Da    PI: 8.4146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g114040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-0687109427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      + C ff+  G+C+ G++C+F Hgp
  Medtr4g114040.1  87 VTCYFFFN-GFCNKGSKCSFLHGP 109
                      67******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.883635IPR000571Zinc finger, CCCH-type
PfamPF156635.0E-11662No hitNo description
SMARTSM003560.027734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6153763IPR000571Zinc finger, CCCH-type
SMARTSM003560.43962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.35283110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-583108IPR000571Zinc finger, CCCH-type
SMARTSM003560.006983109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-589111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MDEDFQKRNT DCVYFLASPL TCKKGVECEY RHHEIARLNP RDCWYWLSGN CLNPTCAFRH  60
PPVDGHTGVP SEPTQSSLPA TANKTMVTCY FFFNGFCNKG SKCSFLHGPD DSSLTVKPLK  120
NDTVKPLKND TAKPLKNDSA KPLKNDSAKP LKNDSAKPLK IDTVKPLKND SAKPLKIDTM  180
KPLKNDSAKP LKIDSMKPLK NDNGSINKPN LENGTASGNK TSVASSTPRD TITRKALSNI  240
KPQPKEDLQL PLPENVKQQG DCFKISSLDY KEAVVTRSDS PLPEDGFAHN MSPSCTEQSS  300
EEQENSQVEP EERSSPGFDV LVHDESGNNL GYEGGSEYLP VLDMDDHELN EQYLGYEFKN  360
TNDYDTMCSG ADILYERKTY DDYRCFDRDF TSPSERKVCG YPREMVLDTI FSRKRIRMST  420
SEMAACDYSD LDLRHHLRRR REVNSPPDTG LLRRHESSSL MVQNRERRHS QDIGQQQNRR  480
LTSQVGFSSI REVEDLSIAN KQRLFRPYQQ SRPRKHYREK PAKRPFPSSK ESRKPIVKQQ  540
RSIQKSNAFS GPKTLAEIKE EKKKSGESSH CESSSAGFQD PKPLHEILKD RTMD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248200.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g114040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579830.0AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609285.10.0zinc finger CCCH domain-containing protein 32
TrEMBLG7JVC60.0G7JVC6_MEDTR; Nucleic acid-binding protein, putative
STRINGAES914820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]