PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g113970.1 | ||||||||
Common Name | MTR_4g113970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 29096.7 Da PI: 8.1233 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 79 | 103 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f+ GtC+ G++C++aHg Medtr4g113970.1 79 FKTRICTKFRF-GTCRNGENCNYAHG 103 69*****9977.*************8 PP | |||||||
2 | zf-CCCH | 28.6 | 2.4e-09 | 146 | 169 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ ++ + +C+yGd+C+F H Medtr4g113970.1 146 KMKLCKKYYIGEECPYGDKCSFLH 169 789*******66************ PP | |||||||
3 | zf-CCCH | 33.7 | 6.1e-11 | 221 | 246 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ ++ tG C++G++C FaHg+ Medtr4g113970.1 221 WKTKLCQ-WQHTGSCPFGETCDFAHGE 246 8******.*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.32E-8 | 77 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-13 | 77 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-5 | 78 | 104 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.652 | 78 | 105 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-5 | 79 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0095 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.047 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-7 | 146 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-8 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-11 | 215 | 246 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-7 | 219 | 246 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-4 | 220 | 246 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 220 | 247 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.8E-8 | 221 | 246 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MNFPDDIPTC RMSPPQFASS NNDIIEVRPQ IPMQNDHFEP HSFKRARIAD NNPPPSGLMC 60 PPSRMIQPPP NRGTSSIFFK TRICTKFRFG TCRNGENCNY AHGADEIRQP PRNWQELVDP 120 RNEERHQVET RQQPPNWDED QKIIHKMKLC KKYYIGEECP YGDKCSFLHE DPARFRDASW 180 KTRECSAISV GNIGSPKSFG YGSNNLEGIR AVNKPARSAY WKTKLCQWQH TGSCPFGETC 240 DFAHGEAGNV NSSVC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g113970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152067 | 0.0 | AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence. | |||
GenBank | AC157983 | 0.0 | AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609280.3 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 2e-58 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | G7JVC1 | 0.0 | G7JVC1_MEDTR; Zinc finger CCCH domain protein | ||||
STRING | AES91477 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 9e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g113970.1 |
Entrez Gene | 11444426 |
Publications ? help Back to Top | |||
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