PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g113940.1
Common NameMTR_4g113940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 271aa    MW: 30545.6 Da    PI: 8.4252
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g113940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-075680126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt++C  f+  GtC+ G +C+FaHg
  Medtr4g113940.1 56 YKTRICTKFRF-GTCRNGQNCNFAHG 80
                     9*******977.*************8 PP

2zf-CCCH17.76.5e-06118140325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      ++lC+++  + +C+yGd+C F H
  Medtr4g113940.1 118 MKLCKNYCNGEECPYGDNCIFLH 140
                      579******66***********9 PP

3zf-CCCH32.51.5e-10182207227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lCr++  tG+C++G +C FaHg+
  Medtr4g113940.1 182 KTKLCRNWKHTGYCSFGMNCLFAHGE 207
                      9***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.67E-95286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-155388IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-45581IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6435582IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-55680IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901115143IPR000571Zinc finger, CCCH-type
SMARTSM003560.036117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-7119141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-15176212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-10179211IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.704180208IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-8182207IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAFPDDIPTS KMSPPQFASL SNNDFKREGT SPSNALICPP PRMTLPQSNK SDHIFYKTRI  60
CTKFRFGTCR NGQNCNFAHG AEELRQPPPH WQKLVGLRSE GRMQLGNHAK DKKIIQTMKL  120
CKNYCNGEEC PYGDNCIFLH EDPAQFRDDS LKLRECSAIT IETNNLEGSR ALNKQARSTY  180
RKTKLCRNWK HTGYCSFGMN CLFAHGEEEL QVPGGAIQAE AAVTIENSTN AATSPASLLV  240
EKEEEHVRKK RILGLKFSQI NRIYGDWIDD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g113940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520670.0AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence.
GenBankAC1579830.0AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609277.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT814e-57C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLG7JVB80.0G7JVB8_MEDTR; Zinc finger CCCH domain protein
STRINGAES914740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-57C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]