PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g113940.1 | ||||||||
Common Name | MTR_4g113940 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 271aa MW: 30545.6 Da PI: 8.4252 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.8e-07 | 56 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C f+ GtC+ G +C+FaHg Medtr4g113940.1 56 YKTRICTKFRF-GTCRNGQNCNFAHG 80 9*******977.*************8 PP | |||||||
2 | zf-CCCH | 17.7 | 6.5e-06 | 118 | 140 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+++ + +C+yGd+C F H Medtr4g113940.1 118 MKLCKNYCNGEECPYGDNCIFLH 140 579******66***********9 PP | |||||||
3 | zf-CCCH | 32.5 | 1.5e-10 | 182 | 207 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lCr++ tG+C++G +C FaHg+ Medtr4g113940.1 182 KTKLCRNWKHTGYCSFGMNCLFAHGE 207 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.67E-9 | 52 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-15 | 53 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-4 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-5 | 56 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.901 | 115 | 143 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.036 | 117 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-7 | 117 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-7 | 119 | 141 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-15 | 176 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-10 | 179 | 211 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-5 | 180 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.704 | 180 | 208 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-8 | 182 | 207 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAFPDDIPTS KMSPPQFASL SNNDFKREGT SPSNALICPP PRMTLPQSNK SDHIFYKTRI 60 CTKFRFGTCR NGQNCNFAHG AEELRQPPPH WQKLVGLRSE GRMQLGNHAK DKKIIQTMKL 120 CKNYCNGEEC PYGDNCIFLH EDPAQFRDDS LKLRECSAIT IETNNLEGSR ALNKQARSTY 180 RKTKLCRNWK HTGYCSFGMN CLFAHGEEEL QVPGGAIQAE AAVTIENSTN AATSPASLLV 240 EKEEEHVRKK RILGLKFSQI NRIYGDWIDD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g113940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152067 | 0.0 | AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence. | |||
GenBank | AC157983 | 0.0 | AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609277.1 | 0.0 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 4e-57 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | G7JVB8 | 0.0 | G7JVB8_MEDTR; Zinc finger CCCH domain protein | ||||
STRING | AES91474 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g113940.1 |
Entrez Gene | 11440260 |
Publications ? help Back to Top | |||
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