PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g113890.1 | ||||||||
Common Name | MTR_4g113890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C3H | ||||||||
Protein Properties | Length: 232aa MW: 25861.6 Da PI: 8.3672 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 64 | 88 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C f G C+ G +C+FaHg Medtr4g113890.1 64 YKTRICTKFIF-GACRNGTNCNFAHG 88 9*******988.*************8 PP | |||||||
2 | zf-CCCH | 21.7 | 3.6e-07 | 115 | 138 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ + + C+yGd+CkF H Medtr4g113890.1 115 KMKLCKKYCNGEKCPYGDKCKFLH 138 7899******66************ PP | |||||||
3 | zf-CCCH | 34 | 4.9e-11 | 150 | 175 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC + tG+C++G +C+FaHg+ Medtr4g113890.1 150 KTKLCLKWKDTGYCSFGKNCHFAHGE 175 9***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-14 | 60 | 96 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-8 | 60 | 94 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.239 | 63 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 63 | 89 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 113 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-7 | 114 | 140 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-8 | 115 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-5 | 115 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-15 | 146 | 180 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.169 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.24E-10 | 148 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 150 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAFPDDIPTS KITPPQFASL NNDDFKREGT SHSNALICPP SDALICPPPR MTLPQSNRSD 60 HIFYKTRICT KFIFGACRNG TNCNFAHGAE EIRQPPPNSQ KLVGPCNEDK KIINKMKLCK 120 KYCNGEKCPY GDKCKFLHED PAQFRGTYRK TKLCLKWKDT GYCSFGKNCH FAHGEEELQV 180 PGGAIEAEAA VAIEADAAIT IAKEEEQAKK KRILGLKFSQ INRIYGDWID G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g113890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC152067 | 0.0 | AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence. | |||
GenBank | AC157983 | 0.0 | AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609272.1 | 1e-173 | zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 3e-45 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | G7JVB3 | 1e-172 | G7JVB3_MEDTR; Putative transcription factor C3H family | ||||
STRING | AES91469 | 1e-172 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8333 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-32 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g113890.1 |
Entrez Gene | 11438765 |
Publications ? help Back to Top | |||
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