PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g113860.1
Common NameMTR_4g113860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 322aa    MW: 36540.5 Da    PI: 9.3322
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g113860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-0884108126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt++C  f+  GtC+ G  C+FaHg
  Medtr4g113860.1  84 YKTRICTKFRF-GTCRNGKDCNFAHG 108
                      9*******977.*************9 PP
2zf-CCCH22.42.1e-07216240327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         C +++  G C++G+ C+F+Hg+
  Medtr4g113860.1 216 NNMCFRWQHQGSCPFGEDCHFSHGE 240
                      5567789999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.5E-1579116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-980114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51183110IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-583109IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-684108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6142170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45143171IPR000571Zinc finger, CCCH-type
SMARTSM003560.084143170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-6145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-9208240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7212240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418213241IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079215240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVFPDNIPTS KMSPPQFATS NNDIVEVRPR FPMKNENFEQ HSTLYQPHSL KRARISDNNR  60
SNALICLPPK MVLPPSNRAT HIFYKTRICT KFRFGTCRNG KDCNFAHGVE ELRQPPGNWL  120
ELVSPCNDEQ KQLRNWEEDQ KFIHKMKLCR MYSNGEKCFF GSKCNFRHED PAKSRDHSWK  180
SGECSSISIG TIGSSKSFGD GIRAVNKPAR GTYWKNNMCF RWQHQGSCPF GEDCHFSHGE  240
AVAIANSTKA INPTSRKALT GSGNDAYAPT TFPARLVAKE EEQAKKMHLL WLKLNKINRV  300
YGDWIDDSLL VLPNLPSAVE N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g113860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520670.0AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636558.10.0zinc finger CCCH domain-containing protein 39
TrEMBLG7JVB00.0G7JVB0_MEDTR; Zinc finger CCCH domain protein
STRINGAES914660.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-57C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]