PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g112490.1 | ||||||||
Common Name | MTR_4g112490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 205aa MW: 22822.8 Da PI: 10.0304 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.1 | 2.5e-14 | 51 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +grW AeI+d s ++ r +lg+f+ ae+Aa ++ a++ l+g Medtr4g112490.1 51 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAALSYDSAARLLRG 101 5899******.7*********42...36***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.36E-30 | 51 | 111 | No hit | No description |
PROSITE profile | PS51032 | 19.77 | 52 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-8 | 52 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-18 | 52 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-27 | 52 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-33 | 52 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MENKDTLKFP HQTHKNNNIS LIPHEIDKPY ENKERNTIKK IPKTSNKGHQ KKYLGVRQRP 60 SGRWIAEIKD SSQKLRLWLG TFDRAEDAAL SYDSAARLLR GRNAKTNFPN THEQDFSILG 120 KNPRAFQLLK HAMMKNHAVS SSSSVYSTVM MPWKNDQLDA IVEETIVCSI PDDEGSTAAG 180 CSGISFGNSK VYSSVVVAPS FSAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-16 | 51 | 109 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g112490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137819 | 0.0 | AC137819.22 Medicago truncatula chromosome 8 clone mth2-21i24, complete sequence. | |||
GenBank | AC162031 | 0.0 | AC162031.12 Medicago truncatula chromosome 8 clone mth2-194a22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003609147.1 | 1e-153 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | G7JT22 | 1e-152 | G7JT22_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES91344 | 1e-152 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12349 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-27 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g112490.1 |
Entrez Gene | 11439179 |
Publications ? help Back to Top | |||
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