PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g111935.1 | ||||||||
Common Name | MTR_4g111935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 389aa MW: 44497.4 Da PI: 9.3126 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 130.3 | 1.9e-40 | 131 | 273 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec..eaesssssasnss 86 k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGf k+skt++WLl+q+k +ik l++ s+ss sec +s ++++n++ Medtr4g111935.1 131 SKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKLLAREknvnfptkSASSTSECteGVSSLDNEVGNQE 224 69****************************************************************9987666666888654455555556777 PP TCP 87 sgkaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 +++++k +k+++s+++ +++++ r+kar+rarert+ek + +++ Medtr4g111935.1 225 EPQQQKLVMKRRNSTNKVCRKSAFNSIGREKARERARERTKEKRKARTS 273 77888888899999999999999999******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.7E-39 | 131 | 269 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.639 | 132 | 190 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.258 | 250 | 267 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MYSSNSSLNG NNLAFSSKSP FCSFESNSTS SKDIENSHSP FPLPSPFSFF QFPNYPDDDI 60 DPFQDSHQIF LQQHDVDFQL HHPPVVMNNN STDHHQRPSN STIKANNNLL PAAAGKGKTV 120 VDQQIQRKRS SKRDRHSKIK TAKGLRDRRM RLSLEVAKRF FGLQDMLGFE KASKTVDWLL 180 NQSKLEIKLL AREKNVNFPT KSASSTSECT EGVSSLDNEV GNQEEPQQQK LVMKRRNSTN 240 KVCRKSAFNS IGREKARERA RERTKEKRKA RTSLVDESNS KQYNEEGIKT NLIWNPFESV 300 EESAGTHQST QGVTHPSFDH VKLIDEAEVE TSSQKAKEQH SDEDNSLFIM SKWSPPMMFN 360 SLNNLQQHQF EQFHQSMEKP WEAYNNRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g111935.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458053.1 | 0.0 | transcription factor DICHOTOMA | ||||
Refseq | XP_024638725.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A072UQH4 | 0.0 | A0A072UQH4_MEDTR; Putative transcription factor TCP family | ||||
STRING | GLYMA05G07943.1 | 6e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 2e-19 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g111935.1 |
Entrez Gene | 25493935 |
Publications ? help Back to Top | |||
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