PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g111915.1

Common Name

MTR_4g112490

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

ERF

Protein Properties

Length: 141aa MW: 16243.5 Da PI: 10.8725

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g111915.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.1	1.2e-14	51	101	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +grW AeI+d s ++ r +lg+f+ ae+Aa ++ a++ l+g Medtr4g111915.1 51 KKYLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDRAEDAALSYDSAARLLRG 101 5899****.7*****42...36*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.15E-30	51	111	No hit	No description
Pfam	PF00847	1.5E-8	52	101	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.77	52	109	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-19	52	110	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.5E-27	52	110	IPR001471	AP2/ERF domain
SMART	SM00380	6.3E-33	52	115	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-7	53	64	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.0E-7	75	91	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MENKDTLKFP HQTHKNNNIS LIPHEIDKPY ENKERNTIKK IPKTSNKGHQ KKYLGVRQRP 60 SGRWIAEIKD SSQKLRLWLG TFDRAEDAAL SYDSAARLLR GRNAKTNFPN THEQDFSILG 120 KNPRAFQLLK HAMMKNHAVS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-15	51	109	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-15	51	109	4	63	ATERF1
3gcc_A	1e-15	51	109	4	63	ATERF1
5wx9_A	6e-15	52	112	14	75	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g111915.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137819	0.0	AC137819.22 Medicago truncatula chromosome 8 clone mth2-21i24, complete sequence.
GenBank	AC162031	0.0	AC162031.12 Medicago truncatula chromosome 8 clone mth2-194a22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003609147.1	1e-102	ethylene-responsive transcription factor 3
Swissprot	Q6J9S1	3e-26	RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBL	G7JT22	1e-100	G7JT22_MEDTR; AP2 domain class transcription factor
STRING	AES91344	1e-101	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12349	27	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	1e-28	related to AP2 11

Link Out ? help Back to Top
Phytozome	Medtr4g111915.1
Entrez Gene	11439179

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Meng S, et al. Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level. Mol Plant, 2016. 9(3): p. 461-470 [PMID:26732494]