PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g110040.3
Common NameMTR_4g110040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 571aa    MW: 62727.4 Da    PI: 7.986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g110040.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.81.7e-17268317255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Medtr4g110040.3 268 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 317
                      889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-24263339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-19264337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.653266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-15268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-15268321No hitNo description
SMARTSM003531.5E-13272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MELPQTRSYG AGGAGRKSTH DFLSLYSNST AEQDPRPSAQ ASFLKTHDFL RPLEEVEAKS  60
SAKEEATDEI SSVVEKQPPL ATPASVEHLL PGGIGTYSIS HINSCVNNNQ RVPKPEASSL  120
FTVHQATSAD RNDDNSNCSS HTSSGFTLWE ESEIRKGKTG KENNVGDKPI IGDSAAKLGQ  180
WTLKERTSQS FSNNHHGSFN SRSSSQTTGQ KNQSFMEMMK SAQDCAQDEE LENEGTFFLK  240
RESSNVQRGE LRVRVDGKST DQKPNTPRSK HSATEQRRRS KINDRFQMLR ELIPHSDQKR  300
DKASFLLEVI EYIHFLQEKV HKYEGSFQGW NNEPEKLMPW RNNDRPAESF QPRSANGGSN  360
PSPTLLFASK VDEKNITISP TTHGGIHNVE SSLSTTTALK TIDHPSGITN KAFPSPISSQ  420
PNFLTSTQIG GSGGAVSQLR RRLSSDAENT NYQPSVESQT MTSTSEKLKE KELTIEGGAI  480
SISSVYSQGL LDTLTQALQS SGVDLSQASI SVQIELGKQA SLRPNIPMPM CVSKDDEDPS  540
KNQRKMRSGS RVASSEKSDQ ALKKLKMCRS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.148320.0pod| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g110040.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458032.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-125BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A072USK30.0A0A072USK3_MEDTR; Putative transcription factor bHLH family
STRINGXP_004508645.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-119bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]