PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g109980.1 | ||||||||
Common Name | MTR_4g109980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 321aa MW: 34539.6 Da PI: 6.7308 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.5 | 3.4e-39 | 37 | 96 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+ss Medtr4g109980.1 37 QEVMKCPRCDSINTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSS 96 6789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 38 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-33 | 38 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.571 | 40 | 94 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 42 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MQEIQHSIGG AGGTRFFGGG GGDRRLRPNQ NNNNLNQEVM KCPRCDSINT KFCYYNNYNL 60 SQPRHFCKNC RRYWTKGGVL RNVPVGGGCR KSKRSSKPKK SSSSDSTVLP TTPPEAPENK 120 SNSHSSSESS SLTAAAVTET VSEPPPEKKI NRGFENDSLE QGTGDCGIFS EIATFTSLIT 180 SSNETLPFGF GIGNDNRNGN VNVNGFNDAS SFQWQNQKLM SVTGDQKHHE EDALKLLPEN 240 IGGGAGGGGS SGSGSLMDHG IDFSLLQSKT SNGGFGSLDW NGDGSADHQG LFDLPNTVDH 300 GYWNHTQWSD QDHSSLFHLP * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g109980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-32 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458026.1 | 0.0 | dof zinc finger protein DOF5.4 | ||||
TrEMBL | A0A072UQU9 | 0.0 | A0A072UQU9_MEDTR; Dof domain zinc finger protein | ||||
STRING | XP_004508651.1 | 1e-131 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5998 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-42 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g109980.1 |
Entrez Gene | 25493917 |
Publications ? help Back to Top | |||
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