PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g109770.1 | ||||||||
Common Name | MTR_4g109770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 471aa MW: 52323 Da PI: 6.62 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 138 | 2.7e-43 | 123 | 198 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+p v+v+g+eqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+q Medtr4g109770.1 123 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQ 198 **************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.1E-33 | 118 | 184 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.889 | 120 | 197 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-39 | 121 | 198 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.9E-32 | 123 | 196 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 471 aa Download sequence Send to blast |
MESWSYISEE KGSEELGFCE MFGKQYSDDF NFIGNVPSKK LDGKFDDPNE FSVKGDTNFK 60 LSNSVVESNG WDSLIDLKLG RFDDHGNASI DVAFSKGAAP ILSSCESSTP PKRVRVHSMT 120 AYCQVYGCNK DLSSCKDYHK RHKVCEVHSK TPIVIVNGIE QRFCQQCSRF HLLSEFDDGK 180 RSCRKRLAGH NERRRKPQGI HSANSGRLFQ PFGDIGFQGT KPPAASFLCP EVFQSGFWRP 240 MKAEHEAGFR HLSSVPVTNG HLQSRSPFPS YNEKQFPFLH ENVATSTTGS KFSENNSHYA 300 HAIGYASLGN EDFNVFHTAP SIQGLSGISD SCALSLLSSQ SNNTSSQSSE IPFDNPLVIP 360 SSHSHVYSIR SQATSSSRVS DRFLSKLNPA DGSHLSPILV SDNNDIVNFE MEDGIFHDSD 420 FVNARDCLSC EDDATIDLLQ LSSQLQRVEH HRQSLQVKKE FDSSCTLRIT * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 123 | 196 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g109770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458014.1 | 0.0 | putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A072V1P8 | 0.0 | A0A072V1P8_MEDTR; LIGULELESS 1 protein, putative | ||||
STRING | GLYMA04G32002.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69170.1 | 5e-46 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g109770.1 |
Entrez Gene | 25493905 |
Publications ? help Back to Top | |||
---|---|---|---|
|