PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g109660.1

Common Name

MTR_4g109660

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

TCP

Protein Properties

Length: 307aa MW: 33901.8 Da PI: 9.5701

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g109660.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.1	2.7e-29	55	154	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk +eWL+++ + i++l+ ++ +++ ++++++ ++ + + Medtr4g109660.1 55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDIDKLPPLDIPQS-FTQQQTLFQQPA---GStcfslggg 144 78*************************************************************66655.442222222222...1123455555 PP TCP 89 .........k 89 k Medtr4g109660.1 145 fygmnqtkgK 154 5443322221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.596	56	114	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.8E-28	56	161	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MIESSRKDYN KEATKQEGEH GRMESEKFSN KAIATSRQWT SLRNPRIVRV SRSLGGKDRH 60 SKVCTIRGLR DRRIRLSVPT AIQLYDLQDR LGLSQPSKVV EWLIEATQSD IDKLPPLDIP 120 QSFTQQQTLF QQPAGSTCFS LGGGFYGMNQ TKGKEAESSE KGNYYNTNNS SNGFPFPYNL 180 DPSSTLSLSQ FGSHHGNLFP SYQISTSGSG MQFSSSSSNL TVPNSSGNSQ LLFCPSVMPL 240 PSLFTSTLNA PSMESSDIQR QSNHVQILNS SSNGSFIPTI HLPINSPFRR HPTLFSSKLL 300 DSDHNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	9e-20	61	115	1	55	Putative transcription factor PCF6
5zkt_B	9e-20	61	115	1	55	Putative transcription factor PCF6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g109660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024637615.1	0.0	transcription factor TCP17 isoform X1
TrEMBL	A0A396IG22	0.0	A0A396IG22_MEDTR; Putative transcription factor TCP family
STRING	XP_004508663.1	1e-104	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF932	34	119

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	3e-45	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	Medtr4g109660.1
Entrez Gene	25493897

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]