PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g108720.1
Common NameMTR_4g108720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40421.8 Da    PI: 7.3252
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g108720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.92.7e-231053245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     + e++snr+vt+skR+ gilKKA+ELS+LCd+++++++fs+tgk
  Medtr4g108720.1 10 KLESTSNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGK 53
                     679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.292153IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-25295IPR002100Transcription factor, MADS-box
CDDcd002665.60E-26284No hitNo description
PRINTSPR004045.1E-17323IPR002100Transcription factor, MADS-box
PfamPF003199.0E-201154IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRVKLKIKK LESTSNRHVT YSKRKSGILK KAKELSILCD IDILLLMFSP TGKPTLLQGE  60
RSNMEEIIAK FAQLSPQERA KRKMESLEAL KKTFKKLDHD VKIQDFLGSN SQTVEDLSHQ  120
VRVLQARLAE IQQRLSYWSN LEKINNLEHL RQMEDSLRES INRLSIQKEN LEKHQLMSLE  180
CVNQLPEGMS LPLMMSGLQE SQPLSWLLSG DNHQLMLPSE PKFMPFSDNG NRDVECSTDI  240
SLPSYSGYTG NCKLEVGSSP HVTTLGQGGG TLNELNGNPS PYLNVQQCQQ FAYPPPQDLE  300
EVKHHQAINS KSNNVDYQVN NNYDLPKSLF ENGHQFWNST NGSCGIAMYN ENGYHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-14192190MEF2 CHIMERA
6byy_B1e-14192190MEF2 CHIMERA
6byy_C1e-14192190MEF2 CHIMERA
6byy_D1e-14192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g108720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0532120.0BT053212.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-G-19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457907.10.0agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_024637091.10.0agamous-like MADS-box protein AGL65 isoform X1
SwissprotQ7X9I06e-96AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A072USA50.0A0A072USA5_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA17G10941.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.12e-87AGAMOUS-like 65
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]