PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g104260.1
Common NameMTR_4g104260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 574aa    MW: 63117.8 Da    PI: 4.4684
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g104260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-11238260426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C+f+++tG Ck+G +CkF+H+
  Medtr4g104260.1 238 EDCSFYMKTGSCKFGFNCKFNHP 260
                      89********************8 PP
2zf-CCCH28.42.8e-09286310327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + +C++++r+G Ck+G  Ck++H++
  Medtr4g104260.1 286 QTECKYYQRSGGCKFGKACKYNHSR 310
                      568********************95 PP
3zf-CCCH40.83.7e-13329353226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Ck+G++C+F+H+
  Medtr4g104260.1 329 GERECPYYMRTGSCKFGSNCRFNHP 353
                      5799********************9 PP
4zf-CCCH26.51.1e-08462488127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+ff +tG Ck+ ++CkF+H++
  Medtr4g104260.1 462 PGEPECSFFIKTGDCKFKSNCKFHHPK 488
                      5799*********************96 PP
5zf-CCCH34.72.9e-11509534227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C++++r+G+Ck+G+ C+F H++
  Medtr4g104260.1 509 DQSVCSHYSRYGICKFGPACRFDHPE 534
                      5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.249234262IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4234261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6235262IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8238260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4240259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666283311IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017283310IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-7286310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5287310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4289310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798327355IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6327354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6328354IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-11329353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5333352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695461489IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026461488IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5463488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5465490IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878507535IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-5507534IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6508537IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8509534IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4512535IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MEHSEEIDLA ATVSNAEEPQ LGSEVQQSSP VDHHSPPSDL NQTVQKNDDE LAVELHEKLD  60
LKVEDEGVVE TDDKVSNFND GGVVSDERGS ETEDKVLNFD DDERVGDERG AEIEDKVSNF  120
DDGERVGDEE SLKGEKVDEE ESVKGENEEF VEGEERVDVD GDSKGWDTNS WNENVNEELG  180
GGRDADDWGY GVGNGGGAGY GYGAGYGDGY GDGYGYGDEK EEKSSDGTHQ FPLRPEAEDC  240
SFYMKTGSCK FGFNCKFNHP IRRKNQNQAV REKVREREEP EENAGQTECK YYQRSGGCKF  300
GKACKYNHSR GFTAPISELN FLGLPIRLGE RECPYYMRTG SCKFGSNCRF NHPDPTTVGG  360
SDPQSGYGNG GSVSLRGVSQ QPVASWSSRK LNETPFAPLM PTPTQGLAPQ TSDWNGYQAP  420
AYLSERIMHP SSTYVMNNPT IDTNVYMHHQ KQMPFEVFPE RPGEPECSFF IKTGDCKFKS  480
NCKFHHPKNR VAKLPPCNLS DKGLPLRPDQ SVCSHYSRYG ICKFGPACRF DHPESALPLM  540
MPGLGQQSFA NSANAQVAGM GGSASDATIQ QSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.17060.0leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g104260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478740.0BT147874.1 Medicago truncatula clone JCVI-FLMt-22B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608904.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-131C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLG7JMP10.0G7JMP1_MEDTR; Putative transcription factor C3H family
STRINGAES911010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-125C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]