PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g104020.1

Common Name

MTR_4g104020

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRAS

Protein Properties

Length: 522aa MW: 58794.3 Da PI: 6.8826

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g104020.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	359.2	5.9e-110	146	520	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsP 89 lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++L +rl+ ++ ++ + ++s +n s+e a+kl +e +P Medtr4g104020.1 146 LVQLLIACAEAVACRDKSHASVLLSELKSNALVFGSSFQRVASCFVQGLTERLTLIQPIGNNSAGSDTKSMMNimdaaSEEMEEAFKLVYENCP 239 689*************************************************96665555555555555558888788888999**** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 ++f+h++aN+ Ilea+ege+ +H++D+++s +G QW L+q+La+R+ + +lRiT++g +++ +ge L+ +A++lg+++ef Medtr4g104020.1 240 HIQFGHFVANSIILEAFEGESFLHVVDLGMSlglpHGHQWRGLIQSLADRSsHRVRRLRITAIGL----CIARIQVIGEELSIYAKNLGIHLEF 329 ***********************99874444678*********55566*****....*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 ++ v+k+le+l++++++v+++E+l+Vn++lqlh +++es + +vL+++ +lsPkv+v++eq++ hn++ Fl rf+e+l+yysa+fdsl+ Medtr4g104020.1 330 SI-VEKNLENLKPKDIKVNEKEVLVVNSILQLHCVVKESRGALN---AVLQMIHGLSPKVLVMAEQDSGHNGPFFLGRFMESLHYYSAIFDSLD 419 9.8*****************************88887777...9****************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdr 365 a lp+ + +r+k+E++++++ei+n+v+ceg r erhe++ +Wr+r+++aGF+ p++ ++ qak l k + dgy+v ee+g+lvlgWk++ Medtr4g104020.1 420 AMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHEKVDQWRRRMSRAGFQGSPIK--MVVQAKQWLVKNNvCDGYTVVEEKGCLVLGWKSK 511 ****************************************************96..567888888888879*************** PP GRAS 366 pLvsvSaWr 374 p+v+vS+W+ Medtr4g104020.1 512 PIVAVSCWK 520 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.169	120	501	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-107	146	520	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MSPALYASTF KCEVDENPSL MGSYYASLYP NLPILENSAT STWILNPFSD HETETIRDHK 60 KLKRSTVTIP IWFANFSSHS NSFFNNINSN NNSVNSIPRL HFRDHIRTYK QRYFASEAVE 120 EAAEDNFNYN NCEAEEDGSC ADGMRLVQLL IACAEAVACR DKSHASVLLS ELKSNALVFG 180 SSFQRVASCF VQGLTERLTL IQPIGNNSAG SDTKSMMNIM DAASEEMEEA FKLVYENCPH 240 IQFGHFVANS IILEAFEGES FLHVVDLGMS LGLPHGHQWR GLIQSLADRS SHRVRRLRIT 300 AIGLCIARIQ VIGEELSIYA KNLGIHLEFS IVEKNLENLK PKDIKVNEKE VLVVNSILQL 360 HCVVKESRGA LNAVLQMIHG LSPKVLVMAE QDSGHNGPFF LGRFMESLHY YSAIFDSLDA 420 MLPKYDTKRA KMEQFYFAEE IKNIVSCEGP LRMERHEKVD QWRRRMSRAG FQGSPIKMVV 480 QAKQWLVKNN VCDGYTVVEE KGCLVLGWKS KPIVAVSCWK C*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MSPALYASTF KCEVDENPSL MGSYYASLYP NLPILENSAT STWILNPFSD HETETIRDHK  60
KLKRSTVTIP IWFANFSSHS NSFFNNINSN NNSVNSIPRL HFRDHIRTYK QRYFASEAVE  120
EAAEDNFNYN NCEAEEDGSC ADGMRLVQLL IACAEAVACR DKSHASVLLS ELKSNALVFG  180
SSFQRVASCF VQGLTERLTL IQPIGNNSAG SDTKSMMNIM DAASEEMEEA FKLVYENCPH  240
IQFGHFVANS IILEAFEGES FLHVVDLGMS LGLPHGHQWR GLIQSLADRS SHRVRRLRIT  300
AIGLCIARIQ VIGEELSIYA KNLGIHLEFS IVEKNLENLK PKDIKVNEKE VLVVNSILQL  360
HCVVKESRGA LNAVLQMIHG LSPKVLVMAE QDSGHNGPFF LGRFMESLHY YSAIFDSLDA  420
MLPKYDTKRA KMEQFYFAEE IKNIVSCEGP LRMERHEKVD QWRRRMSRAG FQGSPIKMVV  480
QAKQWLVKNN VCDGYTVVEE KGCLVLGWKS KPIVAVSCWK C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-55	153	519	26	378	Protein SCARECROW
5b3h_A	5e-55	153	519	25	377	Protein SCARECROW
5b3h_D	5e-55	153	519	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g104020.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003608883.1	0.0	DELLA protein RGL1
TrEMBL	G7JMM0	0.0	G7JMM0_MEDTR; GRAS family transcription factor
STRING	AES91080	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	6e-75	RGA-like 1

Link Out ? help Back to Top
Phytozome	Medtr4g104020.1
Entrez Gene	11413579

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]