PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g102670.1 | ||||||||
Common Name | MTR_4g102670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18427.6 Da PI: 4.8032 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.2 | 9.5e-14 | 15 | 62 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ g+Wv eIr+p++ + r++lg+f t+e+Aa+a++ a ++l+g Medtr4g102670.1 15 YHGIR--SRGGKWVTEIREPRK---TNRIWLGTFPTPEMAAAAYDVATLALKG 62 88995..779*********854...49*******************9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.072 | 14 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-17 | 14 | 72 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-24 | 14 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-25 | 14 | 72 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.6E-8 | 15 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.26E-23 | 15 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MASSSSSSSK RHPTYHGIRS RGGKWVTEIR EPRKTNRIWL GTFPTPEMAA AAYDVATLAL 60 KGGDAVLNFP NSASKYPVPA SNSPDDIRSA ATAAAELTAA EAVNNDAGLN GRPWYETEFL 120 DEEAIFSMPR LMVEMAEGML LSPPRMNPPP SEYLPEYYTS GESLWSYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 1 | 71 | 1 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g102670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457669.1 | 1e-120 | ethylene-responsive transcription factor ERF026 | ||||
Swissprot | Q9FJ90 | 2e-44 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A072V0P0 | 1e-118 | A0A072V0P0_MEDTR; Ethylene response factor | ||||
STRING | XP_004515795.1 | 2e-79 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g102670.1 |
Entrez Gene | 25493649 |
Publications ? help Back to Top | |||
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