PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g102660.1 | ||||||||
Common Name | MTR_4g102660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24874.1 Da PI: 7.4554 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 42 | 95 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GV r++ ++++Wv+e+r+p + k++r++lg++ t+e+Aa+a++ a+++l+g Medtr4g102660.1 42 PVYRGVrRRNNNNNKWVCEVRVP---NdKSTRIWLGTYPTPEMAARAHDVAALALRG 95 68****777778888*******9...6678*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-13 | 42 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-22 | 43 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-20 | 43 | 105 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-29 | 43 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.904 | 43 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-5 | 44 | 55 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-22 | 44 | 105 | No hit | No description |
PRINTS | PR00367 | 2.3E-5 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MKSSLDESSY VENNSSSSEI LLASEQPKKR AGRRKFKETR HPVYRGVRRR NNNNNKWVCE 60 VRVPNDKSTR IWLGTYPTPE MAARAHDVAA LALRGKSACL NFADSAWRLA LPATNNAKEI 120 RKMAAEAALA FAVVADSKEQ TMISNCDVNS VGVMEVDNKP LQGLCVEVPE EEMLHDWFRS 180 MADEPLRSPI TPFIRHGRDQ WNNVDIDQVD AEVSLWNFTI * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11886 | 0.0 | glandular trichome| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g102660.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457668.1 | 1e-163 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9FJ93 | 1e-55 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A072UPC7 | 1e-162 | A0A072UPC7_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | XP_004515794.1 | 1e-103 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 6e-37 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g102660.1 |
Entrez Gene | 25493648 |