PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g100860.1 | ||||||||
Common Name | MTR_4g100860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 316aa MW: 35506.7 Da PI: 7.7302 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00074 | 210 | 230 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk+F+++ L +H + + Medtr4g100860.1 210 CENCGKTFRSSRALGSHRSIC 230 *****************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.7E-8 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 208 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.746 | 208 | 235 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.021 | 208 | 227 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.37E-7 | 208 | 268 | No hit | No description |
PROSITE profile | PS50157 | 9.494 | 246 | 268 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 246 | 268 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.1E-10 | 246 | 268 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 248 | 268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MERHKCKLCS RTFGNGRALG GHMKAHLAIA KSQQKQFTQP GSFSSSESEE DEEEEEKALI 60 NYVLRENPKK SLKVADPEFS FVRETESVIV QDRESETESK NNPTRQQRSK RNRKQNNDNN 120 HQNFLPQKKP KPSFMVPTTP SQFTEQEPVS SVSDTSPEED VAMCLMMLSR DKWSRKMNNV 180 NNVEQEEDEG SVEKISKVKL LKRVRGKHLC ENCGKTFRSS RALGSHRSIC CRDEAKNGNG 240 NDDKIFECPF CFKVFGSGQA LGGHKRSHLM IPSSSTSTAN VNVNPTAARF KDSFIDLNMP 300 APLEEEDDLS VVSDA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g100860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC183430 | 0.0 | AC183430.31 Medicago truncatula chromosome 8 clone mth2-176i20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003608704.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | G7JIV8 | 0.0 | G7JIV8_MEDTR; C2H2-type zinc-finger protein, putative | ||||
STRING | AES90901 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-41 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g100860.1 |
Entrez Gene | 11412002 |
Publications ? help Back to Top | |||
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