PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g100650.1
Common NameMTR_4g100650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 258aa    MW: 28208.2 Da    PI: 5.1949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g100650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1773122255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Medtr4g100650.1  73 TYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 122
                      69****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1173122IPR001471AP2/ERF domain
SMARTSM003801.3E-3573136IPR001471AP2/ERF domain
PROSITE profilePS5103223.02473130IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2173131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3173131IPR001471AP2/ERF domain
PRINTSPR003677.8E-107485IPR001471AP2/ERF domain
CDDcd000181.71E-3174132No hitNo description
PRINTSPR003677.8E-1096112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDREDSVLIH NSLCPQPTTS LSSYIIASTS SNSSSSLEEE EEEEEATNTK CKEKKKKKVG  60
MVNKVNDRKN NPTYRGVRMR QWGKWVSEIR EPRKKSRIWL GTFPTPDMAA RAHDVAALTI  120
KGSSAYLNFP ELAAVLPRAA SASPKDIQVA AAKAAATVYN HAITDQIELE AEAEPSQAVS  180
SSSSSSSSSS SSHNEGSSLK GEDDMFLNLP DLTLDLRHSG DDGFYYSSSA WLVNGAQHID  240
SSFRLEDPIL WDSYQVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-16741301572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.89690.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g100650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194080.0AC119408.27 Medicago truncatula chromosome 8 clone mth2-5f18, complete sequence.
GenBankAC1490790.0AC149079.9 Medicago truncatula chromosome 8 clone mth2-75i8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608685.20.0ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ75e-54ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLG7JHR10.0G7JHR1_MEDTR; Ethylene response factor
STRINGAES908820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]