PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g100420.1
Common NameMTR_4g100420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 308aa    MW: 34704.5 Da    PI: 5.3285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g100420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-20156206255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp+++g   r++lg+f ta eAaka++ a+ +l+g
  Medtr4g100420.1 156 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETAIEAAKAYDSAAFRLRG 206
                      69*******.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.94E-31155214No hitNo description
PROSITE profilePS5103224.236156214IPR001471AP2/ERF domain
PfamPF008475.2E-14156206IPR001471AP2/ERF domain
SMARTSM003803.2E-38156220IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22156216IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-32156215IPR001471AP2/ERF domain
PRINTSPR003672.2E-13157168IPR001471AP2/ERF domain
PRINTSPR003672.2E-13196216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MANFEEASAL KRIKMHLLGE FSPLPSPIST PCFDFDFDFE FQTIPNISQS ESNSSTSDSS  60
ISLDHYLTNL LETDTQIPLF EFDTKPQLME HESPKALTSS HHVNQPQRTV EKKPKLSRKP  120
SLEIALPKKT EWIQFGKPDP KPEVVVQKPE VAEKQHYRGV RQRPWGKFAA EIRDPNKRGS  180
RVWLGTFETA IEAAKAYDSA AFRLRGSKAI LNFPLEVNAV AASAETTVEG NKKRCREEEE  240
EEEEEVVEVK PVVKKEKITE YDMNCFKEMP LTPSFWTGLW DGDVKGLVSV PPLSPLPSFC  300
LSPLVVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33152219168ATERF1
3gcc_A3e-33152219168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.66970.0flower| leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g100420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1536430.0AC153643.25 Medicago truncatula chromosome 8 clone mth2-109d3, complete sequence.
GenBankBT1426230.0BT142623.1 Medicago truncatula clone JCVI-FLMt-22N6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608660.20.0ethylene-responsive transcription factor 6
SwissprotO803412e-61EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLG7JHN60.0G7JHN6_MEDTR; Ethylene response factor
STRINGAES908570.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-48ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]