PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g099230.1 | ||||||||
Common Name | MTR_4g099230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 157aa MW: 17291.8 Da PI: 8.1327 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.2 | 1.6e-34 | 3 | 101 | 2 | 99 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaCk++rrkC+++C lapyfpa++p+ f +h+lFG+sn++k+lk++++e+ +++am+s+++e+++rar P G++gvi+ + l+++ el Medtr4g099230.1 3 CAACKYQRRKCSPSCDLAPYFPADKPEIFYKAHRLFGVSNMVKMLKNIDDEHlKDEAMKSIIFESDMRARFPATGCLGVIHMYGGMLKKSVDEL 96 ************************************************88887****************************9999999999998 PP DUF260 95 allke 99 +++++ Medtr4g099230.1 97 DHVRN 101 88775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.338 | 1 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-32 | 3 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVCAACKYQR RKCSPSCDLA PYFPADKPEI FYKAHRLFGV SNMVKMLKNI DDEHLKDEAM 60 KSIIFESDMR ARFPATGCLG VIHMYGGMLK KSVDELDHVR NLLAYCKQHN LSSAPSTSSH 120 FSNTPIGANL NTSFMDSTKE AQLNGDNGGV DPQGKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-22 | 3 | 105 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-22 | 3 | 105 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g099230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457575.1 | 1e-115 | LOB domain-containing protein 24 | ||||
Swissprot | Q9STS6 | 1e-29 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A072UQH1 | 1e-114 | A0A072UQH1_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES99850 | 7e-49 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 6e-32 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g099230.1 |
Entrez Gene | 25493583 |
Publications ? help Back to Top | |||
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