PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g098870.6 | ||||||||
Common Name | MTR_4g098870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARR-B | ||||||||
Protein Properties | Length: 581aa MW: 65607.6 Da PI: 5.8958 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.6 | 5.1e-27 | 330 | 384 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G+++A+P++il+lmkv+gLt+++v+SHLQk+R++ Medtr4g098870.6 330 KMKVDWTPELHKKFVKAVEQL-GIDHAIPSRILDLMKVEGLTRHNVASHLQKFRMH 384 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 27.7 | 1.3e-10 | 40 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 vl+ + +++ + +r+ le +y +v + d eal + + +d+++ ++ ++ + G+++l+ +++ +lp i+ + ++ +++ +++ Medtr4g098870.6 40 VLLLEGDNTSVSEIRVKLEAMDY-NVSIFCDVNEALSAVssRPEDFHIAIVEVSSSScEGGFRFLE---NAK-DLPTIMTSNSDCLNTMMKCIA 128 67778888888999999******.***************555555999999999999445555554...444.799999998888********* PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 +Ga +flsKp ++++l++ Medtr4g098870.6 129 LGAVEFLSKPLSEDKLRN 146 ***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.14E-14 | 36 | 154 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.7E-15 | 36 | 187 | No hit | No description |
SMART | SM00448 | 0.0044 | 38 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 19.753 | 39 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.7E-7 | 40 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.50E-7 | 41 | 151 | No hit | No description |
PROSITE profile | PS51294 | 14.485 | 327 | 386 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 328 | 386 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-17 | 329 | 387 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.1E-24 | 330 | 385 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-7 | 333 | 381 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MVLQKELDVD ESLRKDAKPA MVCTANDLQE WKDFPKGLKV LLLEGDNTSV SEIRVKLEAM 60 DYNVSIFCDV NEALSAVSSR PEDFHIAIVE VSSSSCEGGF RFLENAKDLP TIMTSNSDCL 120 NTMMKCIALG AVEFLSKPLS EDKLRNIWQH VVHKAFNAGV SALSESLKPV KESVASILQI 180 QTDNEQNESK ASVELEQVLR SSDNDHHEHY PAPSTPQLKQ VGRLLDDGDC QEQTNCSTEK 240 ESGEHDGESK SVEITCENLN AESITQQTKS EATLVQKEEE EFADASKCES VVSPQLPNVK 300 VLNNSESNTT SANKVVVRSH KCEIKANRKK MKVDWTPELH KKFVKAVEQL GIDHAIPSRI 360 LDLMKVEGLT RHNVASHLQK FRMHKRHILP KQEDRKWLNP RDPTQRNYCL QRPIMPGPPS 420 YYSNHTLPPL APLYPMWGQS GTQTAGMQVW GHSGYPVWQP TESWHWKPFP GMHPDAWGCP 480 VLPPPQPPCY SYSQDIPAVS NANAMDYTFS MMLHSSFDDY PVMQYFPFSF FLLDHSSYMQ 540 VTSLYILIRT ISCCDEIIVL LKSIKKIENM EKVQCFKFDL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-16 | 328 | 383 | 3 | 58 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9951 | 0.0 | flower| root| seed| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g098870.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-45 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457528.1 | 0.0 | two-component response regulator-like APRR2 | ||||
Refseq | XP_024638401.1 | 0.0 | two-component response regulator-like APRR2 | ||||
TrEMBL | A0A072UPE2 | 0.0 | A0A072UPE2_MEDTR; Two-component response regulator-APRR2-like protein | ||||
STRING | XP_004508999.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.5 | 1e-127 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g098870.6 |
Entrez Gene | 25493550 |
Publications ? help Back to Top | |||
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