PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g098870.4
Common NameMTR_4g098870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 561aa    MW: 63340 Da    PI: 5.9904
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g098870.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.64.9e-27310364156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH++Fv+aveqL G+++A+P++il+lmkv+gLt+++v+SHLQk+R++
  Medtr4g098870.4 310 KMKVDWTPELHKKFVKAVEQL-GIDHAIPSRILDLMKVEGLTRHNVASHLQKFRMH 364
                      5689*****************.********************************96 PP
2Response_reg27.81.3e-10201261109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+ + +++  + +r+ le  +y +v  + d  eal  +  + +d+++ ++ ++ +    G+++l+   +++ +lp i+ + ++  +++ +++ 
  Medtr4g098870.4  20 VLLLEGDNTSVSEIRVKLEAMDY-NVSIFCDVNEALSAVssRPEDFHIAIVEVSSSScEGGFRFLE---NAK-DLPTIMTSNSDCLNTMMKCIA 108
                      67778888888999999******.***************555555999999999999445555554...444.799999998888********* PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                      +Ga +flsKp ++++l++
  Medtr4g098870.4 109 LGAVEFLSKPLSEDKLRN 126
                      ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.07E-1416134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-1516167No hitNo description
SMARTSM004480.004418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.75319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.28E-721131No hitNo description
PROSITE profilePS5129414.485307366IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-26308366IPR009057Homeodomain-like
SuperFamilySSF466891.16E-17309367IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24310365IPR006447Myb domain, plants
PfamPF002497.5E-7313361IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVCTANDLQE WKDFPKGLKV LLLEGDNTSV SEIRVKLEAM DYNVSIFCDV NEALSAVSSR  60
PEDFHIAIVE VSSSSCEGGF RFLENAKDLP TIMTSNSDCL NTMMKCIALG AVEFLSKPLS  120
EDKLRNIWQH VVHKAFNAGV SALSESLKPV KESVASILQI QTDNEQNESK ASVELEQVLR  180
SSDNDHHEHY PAPSTPQLKQ VGRLLDDGDC QEQTNCSTEK ESGEHDGESK SVEITCENLN  240
AESITQQTKS EATLVQKEEE EFADASKCES VVSPQLPNVK VLNNSESNTT SANKVVVRSH  300
KCEIKANRKK MKVDWTPELH KKFVKAVEQL GIDHAIPSRI LDLMKVEGLT RHNVASHLQK  360
FRMHKRHILP KQEDRKWLNP RDPTQRNYCL QRPIMPGPPS YYSNHTLPPL APLYPMWGQS  420
GTQTAGMQVW GHSGYPVWQP TESWHWKPFP GMHPDAWGCP VLPPPQPPCY SYSQDIPAVS  480
NANAMDYTFS MMLHSSFDDY PVMQYFPFSF FLLDHSSYMQ VTSLYILIRT ISCCDEIIVL  540
LKSIKKIENM EKVQCFKFDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16308363358ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.99510.0flower| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g098870.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-45AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457528.10.0two-component response regulator-like APRR2
RefseqXP_024638401.10.0two-component response regulator-like APRR2
TrEMBLA0A072UPE20.0A0A072UPE2_MEDTR; Two-component response regulator-APRR2-like protein
STRINGXP_004508999.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-128ARR-B family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]