PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g098500.2 | ||||||||
Common Name | MTR_4g098500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LSD | ||||||||
Protein Properties | Length: 155aa MW: 15911.5 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46 | 8.4e-15 | 36 | 60 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V Medtr4g098500.2 36 CSGCRNLLMYPVGATSVCCAVCNAV 60 ************************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.3e-15 | 75 | 99 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Medtr4g098500.2 75 CGGCHTLLMYIRGATSVQCSCCHTV 99 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.9e-13 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Medtr4g098500.2 113 CGNCRMLLMYQYGARSVKCAVCNFV 137 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 8.1E-4 | 30 | 134 | No hit | No description |
TIGRFAMs | TIGR01053 | 6.6E-14 | 33 | 63 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 6.42E-5 | 36 | 134 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 1.4E-11 | 36 | 60 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 9.6E-15 | 72 | 101 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 75 | 99 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.4E-12 | 110 | 140 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 113 | 137 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MPVPLAPYPT PPPAPAPAPA PYTTPPTNGA QSQLVCSGCR NLLMYPVGAT SVCCAVCNAV 60 TAVPPPGTEM AQLVCGGCHT LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL 120 MYQYGARSVK CAVCNFVTSV GASASTTEPQ KFST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12017 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g098500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053236 | 0.0 | BT053236.1 Medicago truncatula clone MTYFP_FQ_FR_FS1G-O-19 unknown mRNA. | |||
GenBank | BT138324 | 0.0 | BT138324.1 Medicago truncatula clone JCVI-FLMt-16N6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003608622.1 | 1e-106 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 4e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | B7FMB3 | 1e-105 | B7FMB3_MEDTR; LSD1-type zinc finger protein | ||||
STRING | AES90819 | 1e-105 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-65 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g098500.2 |
Entrez Gene | 11409342 |
Publications ? help Back to Top | |||
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