PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g097950.1 | ||||||||
Common Name | MTR_4g097950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28031.2 Da PI: 9.9771 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 71 | 115 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR++i + f L l+P++ kK++Ka++L A++Y+k+L Medtr4g097950.1 71 HIIAERIRREKISQLFIALSALIPNL-----KKMDKASVLGDAIKYVKEL 115 899***********************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.9 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 71 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.15E-16 | 71 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-16 | 71 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.23E-11 | 71 | 120 | No hit | No description |
SMART | SM00353 | 9.4E-14 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKTEHLSQKT ASYVFSFENE NPPPRKVEPA LKPKTKVVNS KNGPRRVKNN ESNKKNGSFS 60 KSTTTHHTPD HIIAERIRRE KISQLFIALS ALIPNLKKMD KASVLGDAIK YVKELKEQVK 120 MLEEQSKSVE PVVVVKKLSE LSSDEDVSDT SSNSCNGNSD ETSKTNLSLP EVEASLSGKN 180 VLIRILCEKD KAVMVNVYRE IEKLHLLVIN ASSFSFGSSA LAITIIAQME NELNMSIQQL 240 AKKLRVGLVQ LN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 70 | 119 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8763 | 0.0 | root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g097950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC141862 | 0.0 | AC141862.54 Medicago truncatula chromosome 8 clone mth2-33n1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024638889.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | A0A396IFU2 | 1e-180 | A0A396IFU2_MEDTR; Putative transcription factor bHLH family | ||||
TrEMBL | G7JGD7 | 0.0 | G7JGD7_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein | ||||
STRING | AES90790 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g097950.1 |
Entrez Gene | 11405744 |
Publications ? help Back to Top | |||
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