PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097130.3
Common NameMTR_4g097130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 314aa    MW: 34043.3 Da    PI: 10.0695
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097130.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI           +R+  ++k++w++
  Medtr4g097130.3  5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEfssilRTRSNVDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.713161IPR017930Myb domain
SuperFamilySSF466891.94E-15263IPR009057Homeodomain-like
SMARTSM007173.0E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12556IPR009057Homeodomain-like
PfamPF002496.3E-8555IPR001005SANT/Myb domain
CDDcd116601.69E-19657No hitNo description
SMARTSM005263.4E-13131200IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.16133205IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.99E-16143214IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-15145208IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.1E-10145198IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILMDPEFSSI LRTRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKNSPPAPK TDNNQLALGK VVQREDFLDI KPLTISGGTF QSPKPLTICS  120
GTLQSPNSKE QVSRFKNFQL GDNNVLEAIV NMKEPKGSDK AAIASYIEEK YQCPPNLRKL  180
LSAKLQQMVT SGKIVQEKHK YKIMPSSAVS EKRGSSSLML VEARSKDSPE VEKMCDVNIL  240
SKSQIEAELS KVRGMSAQEA AAAAAKAVAE AEVAIAQAEA AAREAEIAEA EAEAAQVFAK  300
AAMKALKCKM LHI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231760.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097130.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361420.0AC136142.12 Medicago truncatula clone mth2-9f9, complete sequence.
GenBankAC1407200.0AC140720.21 Medicago truncatula chromosome 8 clone mth2-17l10, complete sequence.
GenBankAC1470000.0AC147000.32 Medicago truncatula chromosome 8 clone mth2-124a16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457504.10.0telomere repeat-binding factor 2 isoform X2
SwissprotQ9FJW54e-71TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A072V0930.0A0A072V093_MEDTR; MYB transcription factor
STRINGAES907290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.29e-67MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]