PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g095500.2 | ||||||||
Common Name | MTR_4g095500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 52854.9 Da PI: 6.1576 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 303.8 | 4.2e-93 | 57 | 467 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn...sseelaalkl..fsevs 88 ++lL++cA+a++++d +laq++L+ l+++a +dgd++qRla f++AL +r ++ +++ l++++ +++ + n ++++++ +l f++++ Medtr4g095500.2 57 EQLLVHCANAIETNDVTLAQQILWVLNNIAPQDGDSNQRLAYSFLRALTNRAVKtgTCKMLVEQVYSNAHN--NltiDTHRFSVIELanFVDLT 148 79***************************************************933333444444333333..2445555556666699***** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgv 174 P+++f++ +aN aIlea+eg + +Hi+D++ ++++Q p+L++a+a+R e +p +++T+ ++++ + ++ee+g++L +fA++ +v Medtr4g095500.2 149 PWHRFGYAAANAAILEATEGFSVIHIVDLSSTHCMQIPTLIDAIANRHEVAPLIKLTVSDHANCNsdqlippkLDLSYEELGSKLVNFARSRNV 242 ***********************************************************9987778899997667789**************** PP GRAS 175 pfefnvl...vakrledleleeLrvkp....gEalaVnlvlqlhrll......................desvsleserdevLklvkslsPkvv 239 ++ef+v+ +++ +++l +e+Lrv++ gEal++n++++lh+++ +++++s r+ +L+++++l P++v Medtr4g095500.2 243 TLEFRVVsssYTNGFASL-IEHLRVQRlvysGEALVINCHMMLHYIPdetlsnsnsyvydsmsstttatTITTTTTSLRSLFLNALRGLDPTLV 335 ******966533344444.777887777777***********************************98866666666788************** PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 ++v++++d++s++++ r+ +a++y + +d++++ lpr s++r+++E+ + ++i+nv+a+eg +r+er e +kW++r+++a F+ + ++e+ Medtr4g095500.2 336 ILVDEDVDLTSNNLVSRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAHEGVQRVERVEPISKWEQRMRNANFQGIGFGEEC 428 *************************************************.******************************************** PP GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + ++k++l +++ g+ +++e++ +vl+Wk++++v++SaW Medtr4g095500.2 429 VGEVKAMLDEHA-AGWGLKKEDEHIVLTWKGHNVVFASAW 467 ************.999************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.266 | 30 | 449 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-90 | 57 | 467 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MTQFTHSLPY LHQTTTTFSN PSSSMNKNNQ VPPDKPTKPW FPTSKALTTF GDTNCMEQLL 60 VHCANAIETN DVTLAQQILW VLNNIAPQDG DSNQRLAYSF LRALTNRAVK TGTCKMLVEQ 120 VYSNAHNNLT IDTHRFSVIE LANFVDLTPW HRFGYAAANA AILEATEGFS VIHIVDLSST 180 HCMQIPTLID AIANRHEVAP LIKLTVSDHA NCNSDQLIPP KLDLSYEELG SKLVNFARSR 240 NVTLEFRVVS SSYTNGFASL IEHLRVQRLV YSGEALVINC HMMLHYIPDE TLSNSNSYVY 300 DSMSSTTTAT TITTTTTSLR SLFLNALRGL DPTLVILVDE DVDLTSNNLV SRLRSAFNYL 360 WIPYDTVDTF LPRGSKQRQW YEADICWKIE NVIAHEGVQR VERVEPISKW EQRMRNANFQ 420 GIGFGEECVG EVKAMLDEHA AGWGLKKEDE HIVLTWKGHN VVFASAWLPA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 4e-50 | 57 | 469 | 88 | 474 | Protein SHORT-ROOT |
5b3h_B | 1e-50 | 57 | 469 | 34 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-50 | 57 | 469 | 34 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.294 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g095500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137703 | 0.0 | AC137703.43 Medicago truncatula chromosome 8 clone mth2-11d24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024638779.1 | 0.0 | scarecrow-like protein 32 | ||||
Swissprot | Q9SN22 | 1e-170 | SCL32_ARATH; Scarecrow-like protein 32 | ||||
TrEMBL | G7JCU8 | 0.0 | G7JCU8_MEDTR; GRAS family transcription factor | ||||
STRING | AES90673 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-167 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g095500.2 |
Entrez Gene | 11411849 |
Publications ? help Back to Top | |||
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