PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094762.1
Common NameMTR_126s0015, MTR_4g094762
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 487aa    MW: 54466.3 Da    PI: 5.2087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094762.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13291337354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h + E++RR+++N ++  Lr+l+P++     +K + a+++  A+eYI++L
  Medtr4g094762.1 291 TKHFATEKQRREQLNGKYKILRDLIPSP-----TKTDRASVVGDAIEYIREL 337
                      79**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15286357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-11291337No hitNo description
PfamPF000107.4E-11291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-12291355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-11294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSGSGDKQN MHEQNGCFDP NTKDEGVENS PNDNNTNNNN SLEENFKPSV EELPYHNHQN  60
SQHLDDVSTY TNGFTPSSVD IEQLQNLGLN IGNTYNNMDN HLVQEVYQNS TWDPSVQDMD  120
YVNHQEHRQL SEQQYQQFIE AQNHNQSYNP STILDPHYPS PDVLNLLNLP RCSSSLLTNS  180
STICMTNPTQ NPPNFHNSMT FLGDLPIGSS DNTSGSSVLY DPLYPLNLPP QPPALRELFQ  240
SLPRGYSMPT NSRNGSLFGG GDEMEGDGDM GVLEFNRVTA SVGKGRGGKA TKHFATEKQR  300
REQLNGKYKI LRDLIPSPTK TDRASVVGDA IEYIRELIRT VNELKLLVEK KRHGREMCKR  360
LKTEDDAAES CNIKPFGDPD GSIRTSWLQR KSKDSEVDVR IIDDDVTIKL FQRKKVNCLL  420
FVSKVLDELQ LELHHVAGGH VGEYCSFLFN SKVNEGSSVY ASAIANRVID VMDTQYAAGL  480
PHISRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094762.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0090661e-124AP009066.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256, complete sequence.
GenBankFJ3797601e-124FJ379760.1 Lotus japonicus putative basic helix-loop-helix protein BHLH14 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457399.10.0transcription factor bHLH91
TrEMBLG8A1V60.0G8A1V6_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES854440.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.15e-65bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]