PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094638.1
Common NameMTR_4g094638
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 179aa    MW: 19621.9 Da    PI: 10.3762
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094638.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45.2e-201153345
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     +en s r+vtfskR+ gi+KKA+ELS+LC+a+v ++ f ++g+
  Medtr4g094638.1 11 VENRSARYVTFSKRKSGIFKKASELSILCNARVGIVGFTPSGN 53
                     79***********************************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-24171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.964161IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-211157IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRKKIEMEL VENRSARYVT FSKRKSGIFK KASELSILCN ARVGIVGFTP SGNPFAFGSP  60
NFQAVAEQYL HGGQELEAGS SRQIVTLSEN PNIKLMNKEL SGLTEELKKV EEVKKGKAPI  120
ALSDLNLKEL LKVKSSLKEL HGDIDASSSL LLLSKKPIRI IDLVCKRMGK SNIVKTSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094638.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457351.11e-125agamous-like MADS-box protein AGL29
TrEMBLA0A072UP111e-124A0A072UP11_MEDTR; MADS-box transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-29AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]