PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094632.1
Common NameMTR_4g094632
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17417 Da    PI: 9.1016
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094632.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.4e-181154346
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     ++nk  r+vtfskRr g++KKA+ LS+LC+a+v ++ f + gk 
  Medtr4g094632.1 11 VDNKKARNVTFSKRRSGLFKKASDLSILCNARVGIVGFTPGGKP 54
                     68**********************************99999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-28160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.474161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-24273IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-211257IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGRKKIEIEL VDNKKARNVT FSKRRSGLFK KASDLSILCN ARVGIVGFTP GGKPFAFGSP  60
TFEAVTNVYL HGEEGESSRK NVKPSRNQNI NKLNKELSDL TEELEEVDKG KASMVPTDLD  120
LEELLKVKTS LKDLHGNIEA ASSLLLLAKN PVHIIDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094632.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457349.11e-110agamous-like MADS-box protein AGL29
TrEMBLA0A072UZY51e-109A0A072UZY5_MEDTR; MADS-box transcription factor family protein
STRINGXP_004504915.11e-38(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-32AGAMOUS-like 29
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]